miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 68491 0.72 0.42045
Target:  5'- gGCgGCCGAGc-CGGCCGUGCGgGUgaucuGCCa -3'
miRNA:   3'- -CG-CGGCUCacGUCGGCACGCgCG-----UGG- -5'
10738 3' -60.8 NC_002794.1 + 270 0.72 0.428851
Target:  5'- cGCGCggacgCGAGgacgGCGGCCcUG-GCGCGCCg -3'
miRNA:   3'- -CGCG-----GCUCa---CGUCGGcACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 141439 0.72 0.43735
Target:  5'- gGCGCCGGGgGC-GCCGggagcgGCGCgGCGuCCg -3'
miRNA:   3'- -CGCGGCUCaCGuCGGCa-----CGCG-CGU-GG- -5'
10738 3' -60.8 NC_002794.1 + 82672 0.72 0.43735
Target:  5'- cGCGCCGGcGgaucGCAcGCCGUucGCccgGCGCGCCg -3'
miRNA:   3'- -CGCGGCU-Ca---CGU-CGGCA--CG---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 106346 0.72 0.43735
Target:  5'- uCGCCGGGUcGaCGGCgG-GCGgGCGCCg -3'
miRNA:   3'- cGCGGCUCA-C-GUCGgCaCGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 186849 0.72 0.454635
Target:  5'- aGCGCgCGGGcGCuGCCGUGCaGCaGCAgCg -3'
miRNA:   3'- -CGCG-GCUCaCGuCGGCACG-CG-CGUgG- -5'
10738 3' -60.8 NC_002794.1 + 107524 0.72 0.454635
Target:  5'- aCGCCGA---CGGCCG-GCGCgGCGCCg -3'
miRNA:   3'- cGCGGCUcacGUCGGCaCGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 32399 0.72 0.454635
Target:  5'- aGCGCCGAcuugcugcgGUGCAGCaCGaagcugagauucUGCGCGgcgauCACCg -3'
miRNA:   3'- -CGCGGCU---------CACGUCG-GC------------ACGCGC-----GUGG- -5'
10738 3' -60.8 NC_002794.1 + 126253 0.72 0.454635
Target:  5'- gGCGCgCGAGgucgGCGGCUGgcugGCG-GCGCUg -3'
miRNA:   3'- -CGCG-GCUCa---CGUCGGCa---CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 147681 0.71 0.462532
Target:  5'- cGCGCuCGAGgacccggcggcgaUGCGGCgcaCGUGCGCcaGUACCg -3'
miRNA:   3'- -CGCG-GCUC-------------ACGUCG---GCACGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 102681 0.71 0.462532
Target:  5'- gGCGaCCGGGUGUcguacgugcugacGGCCGgGCcgccggacggGCGCGCCa -3'
miRNA:   3'- -CGC-GGCUCACG-------------UCGGCaCG----------CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 70003 0.71 0.463414
Target:  5'- cGCGCCGAccGaCAGCagGUGCGCGaucaGCCc -3'
miRNA:   3'- -CGCGGCUcaC-GUCGg-CACGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 48043 0.71 0.463414
Target:  5'- aCGCCGAGUGCGuGCUGgGCacgGCGCugaugGCCg -3'
miRNA:   3'- cGCGGCUCACGU-CGGCaCG---CGCG-----UGG- -5'
10738 3' -60.8 NC_002794.1 + 58655 0.71 0.471391
Target:  5'- gGCGaCGGGcUGCugcagccGGCCGUGCacGCGCACUa -3'
miRNA:   3'- -CGCgGCUC-ACG-------UCGGCACG--CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 126614 0.71 0.472281
Target:  5'- gGCGCCGAcGUcGCGG-CGUGaGCGCgACCg -3'
miRNA:   3'- -CGCGGCU-CA-CGUCgGCACgCGCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 186645 0.71 0.472281
Target:  5'- cCGCgCGGGU-CGGCC--GCGCGCACCc -3'
miRNA:   3'- cGCG-GCUCAcGUCGGcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 121388 0.71 0.472281
Target:  5'- cCGCCGGGaccGCGGCCG-GCGCcgGgACCg -3'
miRNA:   3'- cGCGGCUCa--CGUCGGCaCGCG--CgUGG- -5'
10738 3' -60.8 NC_002794.1 + 71228 0.71 0.472281
Target:  5'- -gGCCGcguAGUgGCGGCCG-GCGUGgACCg -3'
miRNA:   3'- cgCGGC---UCA-CGUCGGCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 69724 0.71 0.481234
Target:  5'- cCGUCGAGUGCcGCCGga-GCGCcacgGCCg -3'
miRNA:   3'- cGCGGCUCACGuCGGCacgCGCG----UGG- -5'
10738 3' -60.8 NC_002794.1 + 101577 0.71 0.481234
Target:  5'- aGUGCCGGccgccGCGGCCGgggggGCGgGUGCCg -3'
miRNA:   3'- -CGCGGCUca---CGUCGGCa----CGCgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.