miRNA display CGI


Results 61 - 80 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 34790 0.71 0.484838
Target:  5'- -aGCCGAGU-CGGCCGaaccggcccgggccGCGCGaCACCa -3'
miRNA:   3'- cgCGGCUCAcGUCGGCa-------------CGCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 34720 0.71 0.490268
Target:  5'- gGCGCCacGAGgcgcggGCGGCCGcagaGCGCGCGa- -3'
miRNA:   3'- -CGCGG--CUCa-----CGUCGGCa---CGCGCGUgg -5'
10738 3' -60.8 NC_002794.1 + 34839 0.71 0.490268
Target:  5'- gGCGCCG-GaGCGGgCGUcggaGCGgGCGCCg -3'
miRNA:   3'- -CGCGGCuCaCGUCgGCA----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 191671 0.71 0.49938
Target:  5'- gGCGCCGGcaGCGGCgGcgGCGUGC-CCu -3'
miRNA:   3'- -CGCGGCUcaCGUCGgCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 12232 0.71 0.49938
Target:  5'- gGCGCCGGcgGC-GCCGUcCGCgGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGuCGGCAcGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 55809 0.71 0.49938
Target:  5'- aGCGCCGGGcGCGG----GCGCGCGCUg -3'
miRNA:   3'- -CGCGGCUCaCGUCggcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 113948 0.71 0.49938
Target:  5'- cGCuGCCGGGcuuccUGCAGCCacuccUGCuCGCGCCg -3'
miRNA:   3'- -CG-CGGCUC-----ACGUCGGc----ACGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145119 0.71 0.49938
Target:  5'- gGUGUCGGG-GCAGCUcaugcUGCGgGCGCCc -3'
miRNA:   3'- -CGCGGCUCaCGUCGGc----ACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 122296 0.71 0.506724
Target:  5'- gGCGCgagGAGUGCccgcuggccgucGCCGUGCGCGUGgCg -3'
miRNA:   3'- -CGCGg--CUCACGu-----------CGGCACGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 195112 0.71 0.508567
Target:  5'- gGCGUCucGUGCGcCCGcgGCGCGCGCg -3'
miRNA:   3'- -CGCGGcuCACGUcGGCa-CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 56272 0.71 0.508567
Target:  5'- cGgGCCGAGcaGCAGgCGgcagagcacgaUGCGCGCGCg -3'
miRNA:   3'- -CgCGGCUCa-CGUCgGC-----------ACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 152220 0.71 0.508567
Target:  5'- gGCGUCGGacGUcGCGcGCCacGUcGCGCGCACCg -3'
miRNA:   3'- -CGCGGCU--CA-CGU-CGG--CA-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 102165 0.71 0.508567
Target:  5'- cGCGCCGGG-GCcaUCGUgGCGCGCGgCg -3'
miRNA:   3'- -CGCGGCUCaCGucGGCA-CGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 114525 0.71 0.508567
Target:  5'- -aGUCGAGcgGCAGCCGcGCGaGCugCg -3'
miRNA:   3'- cgCGGCUCa-CGUCGGCaCGCgCGugG- -5'
10738 3' -60.8 NC_002794.1 + 95011 0.7 0.517824
Target:  5'- uCGCUGAuGggGCGGCUGUGCG-GCAUCu -3'
miRNA:   3'- cGCGGCU-Ca-CGUCGGCACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145217 0.7 0.527148
Target:  5'- aGCGCUccuucGUGguGUCGgagGCGCGCGCg -3'
miRNA:   3'- -CGCGGcu---CACguCGGCa--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 39019 0.7 0.527148
Target:  5'- uGUGCUGGG-GCAagaucuacuuucGCCGggacgGCGgGCACCa -3'
miRNA:   3'- -CGCGGCUCaCGU------------CGGCa----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 190120 0.7 0.536533
Target:  5'- cGCGCCGAa-GCGGUC---CGCGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGUCGGcacGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194770 0.7 0.536533
Target:  5'- uGCuCCGAGaaCGGCCGgcacGCGCGCAgCg -3'
miRNA:   3'- -CGcGGCUCacGUCGGCa---CGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 53300 0.7 0.536533
Target:  5'- gGUGCCGAGcgGuCGGCCG-GCGC-CGCg -3'
miRNA:   3'- -CGCGGCUCa-C-GUCGGCaCGCGcGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.