miRNA display CGI


Results 81 - 100 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 44423 0.7 0.536533
Target:  5'- gGCGCCGAGcgGCucgacgacaCCG-GCGCGC-CCg -3'
miRNA:   3'- -CGCGGCUCa-CGuc-------GGCaCGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 183608 0.7 0.536533
Target:  5'- gGgGCCGcGcGCGGCCG-GCGCccccGCGCCc -3'
miRNA:   3'- -CgCGGCuCaCGUCGGCaCGCG----CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 117513 0.7 0.536533
Target:  5'- gGUGCUGGGUGC-GCCG-GCGCaucuGCuCCa -3'
miRNA:   3'- -CGCGGCUCACGuCGGCaCGCG----CGuGG- -5'
10738 3' -60.8 NC_002794.1 + 99771 0.7 0.536533
Target:  5'- cCGCCGcccgcGGUGCcGgCGUcgacuacgaGCGCGCGCCg -3'
miRNA:   3'- cGCGGC-----UCACGuCgGCA---------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194770 0.7 0.536533
Target:  5'- uGCuCCGAGaaCGGCCGgcacGCGCGCAgCg -3'
miRNA:   3'- -CGcGGCUCacGUCGGCa---CGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 126296 0.7 0.536533
Target:  5'- uGCGCCGcgcgccuggcGGUGCAGCgGaGCGUG-ACCc -3'
miRNA:   3'- -CGCGGC----------UCACGUCGgCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 53300 0.7 0.536533
Target:  5'- gGUGCCGAGcgGuCGGCCG-GCGC-CGCg -3'
miRNA:   3'- -CGCGGCUCa-C-GUCGGCaCGCGcGUGg -5'
10738 3' -60.8 NC_002794.1 + 156045 0.7 0.545976
Target:  5'- cGCGCgaCGGGgGCAGCCGUGUcgaauagagcggGCGUugGCCc -3'
miRNA:   3'- -CGCG--GCUCaCGUCGGCACG------------CGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 56919 0.7 0.545976
Target:  5'- gGCGCCG-G-GCuGCCG-GCcuCGCACCa -3'
miRNA:   3'- -CGCGGCuCaCGuCGGCaCGc-GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 105220 0.7 0.545976
Target:  5'- aGgGUCGAcaG-GGCCGUGCGCgGCGCCa -3'
miRNA:   3'- -CgCGGCUcaCgUCGGCACGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 49014 0.7 0.555472
Target:  5'- cGCGCCGcG-GCGGCCGcgGCGuCGU-CCg -3'
miRNA:   3'- -CGCGGCuCaCGUCGGCa-CGC-GCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 145401 0.7 0.555472
Target:  5'- cGCGCCGc--GCGGCCuuaaagcGCgGCGCGCCg -3'
miRNA:   3'- -CGCGGCucaCGUCGGca-----CG-CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 8624 0.7 0.565015
Target:  5'- cGUGCgGAGcGCGGUgGaagacGUGCGCGCCa -3'
miRNA:   3'- -CGCGgCUCaCGUCGgCa----CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 125323 0.7 0.565015
Target:  5'- cGCGCCGAGccggaGCGcGCCacG-GCGCACCg -3'
miRNA:   3'- -CGCGGCUCa----CGU-CGGcaCgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 55644 0.7 0.565015
Target:  5'- cGgGCCGgcaGGcGCAGCCccgacaugGUGCGCGCCu -3'
miRNA:   3'- -CgCGGC---UCaCGUCGGca------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 108154 0.69 0.574601
Target:  5'- cCGCCGGGaGC-GCCG-GCGCGaagaCGCCg -3'
miRNA:   3'- cGCGGCUCaCGuCGGCaCGCGC----GUGG- -5'
10738 3' -60.8 NC_002794.1 + 112075 0.69 0.584223
Target:  5'- uGCaGCCGAGUcaGCAGgucCCGuUGCGCGU-CCa -3'
miRNA:   3'- -CG-CGGCUCA--CGUC---GGC-ACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 190711 0.69 0.584223
Target:  5'- aGCGUCGGGUucucCAGCCGgagaCGCaGCGCCc -3'
miRNA:   3'- -CGCGGCUCAc---GUCGGCac--GCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 14579 0.69 0.584223
Target:  5'- -gGCCGAccgaaGCgGGCCGUGgcgaGCGCGCCg -3'
miRNA:   3'- cgCGGCUca---CG-UCGGCACg---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 44225 0.69 0.584223
Target:  5'- gGCGCCGAGggcucGguGCCGgGCGgcucgGUGCCg -3'
miRNA:   3'- -CGCGGCUCa----CguCGGCaCGCg----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.