miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 12693 0.66 0.774287
Target:  5'- aGCGCCuguucaUGuCGGCCGUGgGCuGCGCg -3'
miRNA:   3'- -CGCGGcuc---AC-GUCGGCACgCG-CGUGg -5'
10738 3' -60.8 NC_002794.1 + 92813 0.66 0.774287
Target:  5'- gGCGCCaAGUGCAGCaagaGCGUggaguucgaGCGCUu -3'
miRNA:   3'- -CGCGGcUCACGUCGgca-CGCG---------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 61823 0.66 0.774287
Target:  5'- gGCgGCCGccgGCGGCCG-GCGUcacuccgcuccGCGCCc -3'
miRNA:   3'- -CG-CGGCucaCGUCGGCaCGCG-----------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 26094 0.66 0.774287
Target:  5'- aGCGCCGAcGgccccgGCGaucGCCGUGgGCcUGCCu -3'
miRNA:   3'- -CGCGGCU-Ca-----CGU---CGGCACgCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 101033 0.66 0.774287
Target:  5'- cGgGCCGGGcGCgggucGGCCGcuacUGCGUGCaggacGCCg -3'
miRNA:   3'- -CgCGGCUCaCG-----UCGGC----ACGCGCG-----UGG- -5'
10738 3' -60.8 NC_002794.1 + 127343 0.66 0.774287
Target:  5'- cGCuGCCGAGacgcucGCGGCgGcgGCGCG-GCCg -3'
miRNA:   3'- -CG-CGGCUCa-----CGUCGgCa-CGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 149975 0.66 0.774287
Target:  5'- cUGCCGcGgaccgGCGGCCGcuaucUGcCGCGCugCu -3'
miRNA:   3'- cGCGGCuCa----CGUCGGC-----AC-GCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 124856 0.66 0.774287
Target:  5'- cCGCCGAcuucaccauggaGUuCAGCucggCGUGCGUGCACg -3'
miRNA:   3'- cGCGGCU------------CAcGUCG----GCACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 41251 0.66 0.774287
Target:  5'- cCGCCGAcgccgGCGGcCCGUcGuCGCGCuCCg -3'
miRNA:   3'- cGCGGCUca---CGUC-GGCA-C-GCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 186294 0.66 0.774287
Target:  5'- cGCgGCC-AG-GCGGCCGgucgccgcgGCGCGCucguCCu -3'
miRNA:   3'- -CG-CGGcUCaCGUCGGCa--------CGCGCGu---GG- -5'
10738 3' -60.8 NC_002794.1 + 137650 0.66 0.774287
Target:  5'- gGCGCCGGGccuccgGC-GCCGcugGUGCGgACg -3'
miRNA:   3'- -CGCGGCUCa-----CGuCGGCa--CGCGCgUGg -5'
10738 3' -60.8 NC_002794.1 + 179436 0.66 0.768942
Target:  5'- gGCGCgGAG-GCguggaccaccgccucGGUCGUgauguucaGCGCGCACUc -3'
miRNA:   3'- -CGCGgCUCaCG---------------UCGGCA--------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 54409 0.66 0.765356
Target:  5'- uCGCgGAGcucGCAGauGUGCGC-CACCu -3'
miRNA:   3'- cGCGgCUCa--CGUCggCACGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145964 0.66 0.765356
Target:  5'- aGCGCCcAGcGC-GCCcaGCGCGC-CCa -3'
miRNA:   3'- -CGCGGcUCaCGuCGGcaCGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 94284 0.66 0.765356
Target:  5'- cGCGgcCCGAGcgggggGCGGCUc-GgGCGCGCCg -3'
miRNA:   3'- -CGC--GGCUCa-----CGUCGGcaCgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 104616 0.66 0.765356
Target:  5'- cGCGCagcuCGGccaGCAGCuCGuUGuCGCGCGCCg -3'
miRNA:   3'- -CGCG----GCUca-CGUCG-GC-AC-GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 117634 0.66 0.765356
Target:  5'- gGCGCCGAccGcGCGGCCccgGaCGaagaGCGCCa -3'
miRNA:   3'- -CGCGGCU--CaCGUCGGca-C-GCg---CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 121034 0.66 0.765356
Target:  5'- -gGCCgGAGaGCGGCgCGU-CGgGCGCCg -3'
miRNA:   3'- cgCGG-CUCaCGUCG-GCAcGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 138936 0.66 0.765356
Target:  5'- cUGCCG-GUGCGcccccaCCGUgGCGUGCugCg -3'
miRNA:   3'- cGCGGCuCACGUc-----GGCA-CGCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 140909 0.66 0.765356
Target:  5'- cGUGgCGGGaccUGCAGgCGcgcUGCcuGCGCACCa -3'
miRNA:   3'- -CGCgGCUC---ACGUCgGC---ACG--CGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.