miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 188272 0.66 0.765356
Target:  5'- cGgGCCGGGUaGCGGaugcaGggcGcCGCGCGCCg -3'
miRNA:   3'- -CgCGGCUCA-CGUCgg---Ca--C-GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 175111 0.66 0.764457
Target:  5'- aCGgUGAGgaucuucUGC-GCUGUGCGUGCACUc -3'
miRNA:   3'- cGCgGCUC-------ACGuCGGCACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 91637 0.66 0.762655
Target:  5'- uGCGCCGccuguccgagcugaAGcUGCAccugucggcGCaCGUGgGCGCGCUg -3'
miRNA:   3'- -CGCGGC--------------UC-ACGU---------CG-GCACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 123447 0.66 0.762655
Target:  5'- uCGCCGAGcgGCuGGCCGaGCaccuguacuacgagGCGCugCg -3'
miRNA:   3'- cGCGGCUCa-CG-UCGGCaCG--------------CGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 55971 0.66 0.756318
Target:  5'- -aGUCGAGguggauggcGUAGCCGcggGCGaGCACCa -3'
miRNA:   3'- cgCGGCUCa--------CGUCGGCa--CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 97078 0.66 0.756318
Target:  5'- uGCGCUucGcGCGGacgaucaCGUGCGCGC-CCu -3'
miRNA:   3'- -CGCGGcuCaCGUCg------GCACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 70295 0.66 0.756318
Target:  5'- -gGCCGGG-GgGGCCcggGCGCGaagaGCCg -3'
miRNA:   3'- cgCGGCUCaCgUCGGca-CGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 59053 0.66 0.756318
Target:  5'- cGCGCC---UGCGGCC-UGgGCcuGCACCu -3'
miRNA:   3'- -CGCGGcucACGUCGGcACgCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 57949 0.66 0.756318
Target:  5'- cGCGCUGc--GCAGCC-UGUGC-CACCc -3'
miRNA:   3'- -CGCGGCucaCGUCGGcACGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194915 0.66 0.756318
Target:  5'- uCGCCGAcaGCAGCg--GC-CGCACCa -3'
miRNA:   3'- cGCGGCUcaCGUCGgcaCGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 61515 0.66 0.756318
Target:  5'- cCGCCGGacgGCGGCCGccgGCG-GcCGCCg -3'
miRNA:   3'- cGCGGCUca-CGUCGGCa--CGCgC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 34080 0.66 0.756318
Target:  5'- cCGCCGGcGgccggGCAGCCGU-CGgGCgGCCc -3'
miRNA:   3'- cGCGGCU-Ca----CGUCGGCAcGCgCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 105635 0.66 0.756318
Target:  5'- aGC-CCGAGUacGCGuucuccgucucGCCGcgGCGCGCuCCg -3'
miRNA:   3'- -CGcGGCUCA--CGU-----------CGGCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 72925 0.66 0.756318
Target:  5'- cCGCCGuc-GgAGCCGgcgucCGCGCGCCc -3'
miRNA:   3'- cGCGGCucaCgUCGGCac---GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 19515 0.66 0.747181
Target:  5'- cGCGCCGcucGGaGC-GCCGgcgcgGCGCGgccCGCCg -3'
miRNA:   3'- -CGCGGC---UCaCGuCGGCa----CGCGC---GUGG- -5'
10738 3' -60.8 NC_002794.1 + 12186 0.66 0.747181
Target:  5'- aCGCCGcc-GCGGCCGgGCGC-CGCUc -3'
miRNA:   3'- cGCGGCucaCGUCGGCaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 124254 0.66 0.747181
Target:  5'- cGCGCgCGGGUaGUcGCCGgccaGcCGCcGCGCCg -3'
miRNA:   3'- -CGCG-GCUCA-CGuCGGCa---C-GCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 100095 0.66 0.747181
Target:  5'- aCGuCCGcGUGCGGCgCGUGCagcgGUGCuCCa -3'
miRNA:   3'- cGC-GGCuCACGUCG-GCACG----CGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 92065 0.66 0.747181
Target:  5'- cGUGCCGcggccGGUGCuGCCaGU-CGUGCuACCa -3'
miRNA:   3'- -CGCGGC-----UCACGuCGG-CAcGCGCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 36857 0.66 0.747181
Target:  5'- uGUGCgGAGaccgccacUGCAGCCGcgccagguaGCGCGUGCa -3'
miRNA:   3'- -CGCGgCUC--------ACGUCGGCa--------CGCGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.