miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 145818 0.66 0.747181
Target:  5'- cCGCCGGcgGCgAGCCGaGCGCGUcgacggucGCCa -3'
miRNA:   3'- cGCGGCUcaCG-UCGGCaCGCGCG--------UGG- -5'
10738 3' -60.8 NC_002794.1 + 106433 0.66 0.746263
Target:  5'- gGCGCUGuuggagaaggcGGUGCAggcggaccucgucGCCGUGacucgGCGCAUCc -3'
miRNA:   3'- -CGCGGC-----------UCACGU-------------CGGCACg----CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 150219 0.66 0.745343
Target:  5'- uGCuGCCGAGcugcgugcgacgGCAGCUGgaaGCGCugCg -3'
miRNA:   3'- -CG-CGGCUCa-----------CGUCGGCacgCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 81224 0.66 0.745343
Target:  5'- uCGUCGuccccccgGGCCGcGCGCGCACCa -3'
miRNA:   3'- cGCGGCucacg---UCGGCaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 142811 0.67 0.737954
Target:  5'- -gGCCGGGU-CGGCCucguucaacgcGUGCGCGUucagguucaggGCCu -3'
miRNA:   3'- cgCGGCUCAcGUCGG-----------CACGCGCG-----------UGG- -5'
10738 3' -60.8 NC_002794.1 + 59664 0.67 0.737954
Target:  5'- gGCGCUGcAGaGCcGCC-UGCGCcuGCACCc -3'
miRNA:   3'- -CGCGGC-UCaCGuCGGcACGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 103822 0.67 0.737954
Target:  5'- gGCGCCGAcGUGgAGUCGcagGCcuugaccaccgaGCGgGCCg -3'
miRNA:   3'- -CGCGGCU-CACgUCGGCa--CG------------CGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 14776 0.67 0.737954
Target:  5'- cCGCUGAGgccgGCgaGGCCG-GCGUG-ACCg -3'
miRNA:   3'- cGCGGCUCa---CG--UCGGCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 187579 0.67 0.737954
Target:  5'- cCGCCGucGGcGCGGCCGccGuCGCGaCGCCc -3'
miRNA:   3'- cGCGGC--UCaCGUCGGCa-C-GCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 94006 0.67 0.737954
Target:  5'- gGCGCCGGcgGCgGGCCG-GCGgGUuccGCCg -3'
miRNA:   3'- -CGCGGCUcaCG-UCGGCaCGCgCG---UGG- -5'
10738 3' -60.8 NC_002794.1 + 116714 0.67 0.737027
Target:  5'- cGCGUCGAGcgucucGguGCCGaGCGUGUuggcgacGCCg -3'
miRNA:   3'- -CGCGGCUCa-----CguCGGCaCGCGCG-------UGG- -5'
10738 3' -60.8 NC_002794.1 + 184571 0.67 0.737027
Target:  5'- cGCGCCGccgcggcGGcgGCGGCCacGCGCG-GCCg -3'
miRNA:   3'- -CGCGGC-------UCa-CGUCGGcaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 95825 0.67 0.736098
Target:  5'- gGCgGCCGGGggagcggcggcgGCGGCCGgggaggcgGCGgGCggGCCg -3'
miRNA:   3'- -CG-CGGCUCa-----------CGUCGGCa-------CGCgCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 53503 0.67 0.735169
Target:  5'- uCGCCGugGGUcGCccaguagauggagaAGCCGUGgGCGCGgCg -3'
miRNA:   3'- cGCGGC--UCA-CG--------------UCGGCACgCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 115190 0.67 0.728643
Target:  5'- gGUGCCGgcGGUcgAGCCG-GCGUaGCGCCu -3'
miRNA:   3'- -CGCGGC--UCAcgUCGGCaCGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 34257 0.67 0.728643
Target:  5'- cCGCCGcAG-GCGGaCCGcGCGCaggcggccaGCGCCa -3'
miRNA:   3'- cGCGGC-UCaCGUC-GGCaCGCG---------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 149656 0.67 0.728643
Target:  5'- uCGCCGAGga-GGCCGagcggggGCGCGuCGCg -3'
miRNA:   3'- cGCGGCUCacgUCGGCa------CGCGC-GUGg -5'
10738 3' -60.8 NC_002794.1 + 72053 0.67 0.728643
Target:  5'- cCGCUGAcccGCAGCCGguugccCGCGUGCCc -3'
miRNA:   3'- cGCGGCUca-CGUCGGCac----GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 121987 0.67 0.728643
Target:  5'- cCGCCGAGcGCGGCCGggaGCuGUuCCa -3'
miRNA:   3'- cGCGGCUCaCGUCGGCacgCG-CGuGG- -5'
10738 3' -60.8 NC_002794.1 + 148529 0.67 0.728643
Target:  5'- uGCGCCGcuucccGUGCcucGUCGgcUGCGCGCGgCu -3'
miRNA:   3'- -CGCGGCu-----CACGu--CGGC--ACGCGCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.