miRNA display CGI


Results 81 - 100 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 72053 0.67 0.728643
Target:  5'- cCGCUGAcccGCAGCCGguugccCGCGUGCCc -3'
miRNA:   3'- cGCGGCUca-CGUCGGCac----GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 121987 0.67 0.728643
Target:  5'- cCGCCGAGcGCGGCCGggaGCuGUuCCa -3'
miRNA:   3'- cGCGGCUCaCGUCGGCacgCG-CGuGG- -5'
10738 3' -60.8 NC_002794.1 + 94040 0.67 0.728643
Target:  5'- gGC-CCGAGagcgGCGGCgGUGCGgGgGCg -3'
miRNA:   3'- -CGcGGCUCa---CGUCGgCACGCgCgUGg -5'
10738 3' -60.8 NC_002794.1 + 89959 0.67 0.719257
Target:  5'- aCGUCGAGgcguuCGGaCCGUG-GUGCGCCg -3'
miRNA:   3'- cGCGGCUCac---GUC-GGCACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 39542 0.67 0.719257
Target:  5'- gGgGCUGcuGUGCGGCCucUGCG-GCGCCc -3'
miRNA:   3'- -CgCGGCu-CACGUCGGc-ACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 118699 0.67 0.719257
Target:  5'- aGCGCCcagGAGcGCaugauGGCCagcUGCGCGUACUg -3'
miRNA:   3'- -CGCGG---CUCaCG-----UCGGc--ACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194665 0.67 0.719257
Target:  5'- uGCGCCGGGUcccCcuCCGgGUGCGaCACCg -3'
miRNA:   3'- -CGCGGCUCAc--GucGGCaCGCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 142471 0.67 0.719257
Target:  5'- aGCGCCGGcaccGUGGaCgCGUGCG-GCGCCg -3'
miRNA:   3'- -CGCGGCUca--CGUC-G-GCACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 65174 0.67 0.719257
Target:  5'- gGCGCCGAGaccggcgGguGCCG-GCGagguCGgACCc -3'
miRNA:   3'- -CGCGGCUCa------CguCGGCaCGC----GCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 47961 0.67 0.719257
Target:  5'- gGCGCCGGcuggGCGaCCGccGCGCGCuCCu -3'
miRNA:   3'- -CGCGGCUca--CGUcGGCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 151563 0.67 0.719257
Target:  5'- uGCuGCUGAcGUaGCGccccCCGgcgGCGCGCGCCg -3'
miRNA:   3'- -CG-CGGCU-CA-CGUc---GGCa--CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 180292 0.67 0.719257
Target:  5'- cGCGCCGcc-GCAacacGCCGgccgGCGCG-ACCa -3'
miRNA:   3'- -CGCGGCucaCGU----CGGCa---CGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 113385 0.67 0.719257
Target:  5'- cCGCCGucGUGCAGgCGcUGCa-GCACCc -3'
miRNA:   3'- cGCGGCu-CACGUCgGC-ACGcgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 76828 0.67 0.709804
Target:  5'- aCGCCa---GCGGCCG-GCgauGCGCGCCg -3'
miRNA:   3'- cGCGGcucaCGUCGGCaCG---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 90477 0.67 0.709804
Target:  5'- cGCGgCGGG-GCcGCCGUcccGCGCGaucgGCCg -3'
miRNA:   3'- -CGCgGCUCaCGuCGGCA---CGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 100785 0.67 0.709804
Target:  5'- cGCGCCugcGGUucGCGGCCGcuucUGCGCcuacGUGCCg -3'
miRNA:   3'- -CGCGGc--UCA--CGUCGGC----ACGCG----CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194503 0.67 0.709804
Target:  5'- cGCGCCcGGcccGCGGCCc-GCGUGcCGCCg -3'
miRNA:   3'- -CGCGGcUCa--CGUCGGcaCGCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 102482 0.67 0.706956
Target:  5'- cGUGCCGgccGGcuuccacguccuguUGCAGCgGcugGCGCGCGCg -3'
miRNA:   3'- -CGCGGC---UC--------------ACGUCGgCa--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 190013 0.67 0.700292
Target:  5'- cCGuCCGGGUccaucgGCGGCCGguaGCGCACg -3'
miRNA:   3'- cGC-GGCUCA------CGUCGGCacgCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 194091 0.67 0.700292
Target:  5'- cCGCCGuGUGCcccGaacaCGUGCuGCGgCACCg -3'
miRNA:   3'- cGCGGCuCACGu--Cg---GCACG-CGC-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.