miRNA display CGI


Results 101 - 120 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 58437 0.67 0.700292
Target:  5'- aCGCCGAG-GCcacgcugcgccuGGCCGcGCugGCGCugCa -3'
miRNA:   3'- cGCGGCUCaCG------------UCGGCaCG--CGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 116225 0.67 0.700292
Target:  5'- cGCGCggcuCGAGUcgauGCccGCCGUGCGcCGUACa -3'
miRNA:   3'- -CGCG----GCUCA----CGu-CGGCACGC-GCGUGg -5'
10738 3' -60.8 NC_002794.1 + 194091 0.67 0.700292
Target:  5'- cCGCCGuGUGCcccGaacaCGUGCuGCGgCACCg -3'
miRNA:   3'- cGCGGCuCACGu--Cg---GCACG-CGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 190013 0.67 0.700292
Target:  5'- cCGuCCGGGUccaucgGCGGCCGguaGCGCACg -3'
miRNA:   3'- cGC-GGCUCA------CGUCGGCacgCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 186956 0.67 0.700292
Target:  5'- cGgGCCGcugGCcGCCGccuccagcagcGCGCGCACCa -3'
miRNA:   3'- -CgCGGCucaCGuCGGCa----------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 114260 0.67 0.690728
Target:  5'- aGCGucuCCGGGgGCgGGUCGUGC-UGCACCa -3'
miRNA:   3'- -CGC---GGCUCaCG-UCGGCACGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 191520 0.67 0.690728
Target:  5'- aGCGCCGGGcGuCGGCCc-GCGCcuccCGCCg -3'
miRNA:   3'- -CGCGGCUCaC-GUCGGcaCGCGc---GUGG- -5'
10738 3' -60.8 NC_002794.1 + 187917 0.68 0.684967
Target:  5'- cCGCCGGGccccGCcGCgaccgucgcgucacgCGUGCGCGCGCg -3'
miRNA:   3'- cGCGGCUCa---CGuCG---------------GCACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 179352 0.68 0.681119
Target:  5'- aCG-UGGGUaCAGaCCGUGCGCGC-CCg -3'
miRNA:   3'- cGCgGCUCAcGUC-GGCACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 37407 0.68 0.681119
Target:  5'- aGCGCCcgcUGCAGCCG-GUccaGCGCCg -3'
miRNA:   3'- -CGCGGcucACGUCGGCaCGcg-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 44719 0.68 0.681119
Target:  5'- cGCGgCGAcGU-CGGCCG-GCGC-CGCCg -3'
miRNA:   3'- -CGCgGCU-CAcGUCGGCaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 194132 0.68 0.681119
Target:  5'- -gGCUGAGgcaGCGGCCGcaGCaGCGC-CCg -3'
miRNA:   3'- cgCGGCUCa--CGUCGGCa-CG-CGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 60009 0.68 0.681119
Target:  5'- gGCGCCGAGcGCA-CCGaccUGCuCGaCGCCg -3'
miRNA:   3'- -CGCGGCUCaCGUcGGC---ACGcGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 90190 0.68 0.681119
Target:  5'- cGCGCgGGG-GCA-CgGUGCcCGCGCCu -3'
miRNA:   3'- -CGCGgCUCaCGUcGgCACGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 36580 0.68 0.680156
Target:  5'- cCGCCGAGcagGCGGuCCGcGUGCcacacgaGCGCCc -3'
miRNA:   3'- cGCGGCUCa--CGUC-GGCaCGCG-------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 80422 0.68 0.671475
Target:  5'- gGCGCCGGGcGgGGCCGccgccgGCG-GcCGCCg -3'
miRNA:   3'- -CGCGGCUCaCgUCGGCa-----CGCgC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 41936 0.68 0.671475
Target:  5'- aGC-CCGaAGUGCAcGCCcucgGCGUGCGCg -3'
miRNA:   3'- -CGcGGC-UCACGU-CGGca--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 193262 0.68 0.671475
Target:  5'- cUGuCCGAGcaGCAGCaacaGcgGCGUGCGCCg -3'
miRNA:   3'- cGC-GGCUCa-CGUCGg---Ca-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 44539 0.68 0.671475
Target:  5'- cGCGCCGucGUcGUcGCCGgcgGCG-GCGCCc -3'
miRNA:   3'- -CGCGGCu-CA-CGuCGGCa--CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 142560 0.68 0.671475
Target:  5'- cGCGCCccggauGGGauagaGCAGCgCGaUGgGCGCGCCc -3'
miRNA:   3'- -CGCGG------CUCa----CGUCG-GC-ACgCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.