miRNA display CGI


Results 1 - 20 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 270 0.72 0.428851
Target:  5'- cGCGCggacgCGAGgacgGCGGCCcUG-GCGCGCCg -3'
miRNA:   3'- -CGCG-----GCUCa---CGUCGGcACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 606 0.68 0.661801
Target:  5'- -gGCCGGGUGCGGUCaggcggcccgGUGUgGCGUucGCCu -3'
miRNA:   3'- cgCGGCUCACGUCGG----------CACG-CGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 867 0.75 0.275031
Target:  5'- cGCGCCcgcGAG-GCGGUcggCGUGCGCGCggGCCg -3'
miRNA:   3'- -CGCGG---CUCaCGUCG---GCACGCGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 8624 0.7 0.565015
Target:  5'- cGUGCgGAGcGCGGUgGaagacGUGCGCGCCa -3'
miRNA:   3'- -CGCGgCUCaCGUCGgCa----CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 12186 0.66 0.747181
Target:  5'- aCGCCGcc-GCGGCCGgGCGC-CGCUc -3'
miRNA:   3'- cGCGGCucaCGUCGGCaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 12232 0.71 0.49938
Target:  5'- gGCGCCGGcgGC-GCCGUcCGCgGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGuCGGCAcGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 12425 0.76 0.268926
Target:  5'- cGCGCCGAcugGCAGCUGUcccGCGUcaGCGCCc -3'
miRNA:   3'- -CGCGGCUca-CGUCGGCA---CGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 12693 0.66 0.774287
Target:  5'- aGCGCCuguucaUGuCGGCCGUGgGCuGCGCg -3'
miRNA:   3'- -CGCGGcuc---AC-GUCGGCACgCG-CGUGg -5'
10738 3' -60.8 NC_002794.1 + 12817 0.66 0.791798
Target:  5'- cGUGCuCGAGgucuaccccgaGCAGUCGUGCcaCGaCACCg -3'
miRNA:   3'- -CGCG-GCUCa----------CGUCGGCACGc-GC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 14579 0.69 0.584223
Target:  5'- -gGCCGAccgaaGCgGGCCGUGgcgaGCGCGCCg -3'
miRNA:   3'- cgCGGCUca---CG-UCGGCACg---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 14776 0.67 0.737954
Target:  5'- cCGCUGAGgccgGCgaGGCCG-GCGUG-ACCg -3'
miRNA:   3'- cGCGGCUCa---CG--UCGGCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 19515 0.66 0.747181
Target:  5'- cGCGCCGcucGGaGC-GCCGgcgcgGCGCGgccCGCCg -3'
miRNA:   3'- -CGCGGC---UCaCGuCGGCa----CGCGC---GUGG- -5'
10738 3' -60.8 NC_002794.1 + 21586 0.67 0.700292
Target:  5'- cGCGaCCGGG-GCGGuCUGUGCccgugacccacCGCGCCg -3'
miRNA:   3'- -CGC-GGCUCaCGUC-GGCACGc----------GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 23907 0.75 0.307218
Target:  5'- -aGCCGAGUGCAGCagCGUGgGCGaGCg -3'
miRNA:   3'- cgCGGCUCACGUCG--GCACgCGCgUGg -5'
10738 3' -60.8 NC_002794.1 + 26094 0.66 0.774287
Target:  5'- aGCGCCGAcGgccccgGCGaucGCCGUGgGCcUGCCu -3'
miRNA:   3'- -CGCGGCU-Ca-----CGU---CGGCACgCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 31917 0.68 0.642397
Target:  5'- aGCGCCGAcaggacGUcCAGCCGcGC-CGCACg -3'
miRNA:   3'- -CGCGGCU------CAcGUCGGCaCGcGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 32399 0.72 0.454635
Target:  5'- aGCGCCGAcuugcugcgGUGCAGCaCGaagcugagauucUGCGCGgcgauCACCg -3'
miRNA:   3'- -CGCGGCU---------CACGUCG-GC------------ACGCGC-----GUGG- -5'
10738 3' -60.8 NC_002794.1 + 33657 0.67 0.700292
Target:  5'- cGCGCUGAgcGUGCAcucgcGCuCGcUGCGCucgcuGCGCCu -3'
miRNA:   3'- -CGCGGCU--CACGU-----CG-GC-ACGCG-----CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 34080 0.66 0.756318
Target:  5'- cCGCCGGcGgccggGCAGCCGU-CGgGCgGCCc -3'
miRNA:   3'- cGCGGCU-Ca----CGUCGGCAcGCgCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 34257 0.67 0.728643
Target:  5'- cCGCCGcAG-GCGGaCCGcGCGCaggcggccaGCGCCa -3'
miRNA:   3'- cGCGGC-UCaCGUC-GGCaCGCG---------CGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.