miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 34720 0.71 0.490268
Target:  5'- gGCGCCacGAGgcgcggGCGGCCGcagaGCGCGCGa- -3'
miRNA:   3'- -CGCGG--CUCa-----CGUCGGCa---CGCGCGUgg -5'
10738 3' -60.8 NC_002794.1 + 34790 0.71 0.484838
Target:  5'- -aGCCGAGU-CGGCCGaaccggcccgggccGCGCGaCACCa -3'
miRNA:   3'- cgCGGCUCAcGUCGGCa-------------CGCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 34839 0.71 0.490268
Target:  5'- gGCGCCG-GaGCGGgCGUcggaGCGgGCGCCg -3'
miRNA:   3'- -CGCGGCuCaCGUCgGCA----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 36352 0.67 0.728643
Target:  5'- cCGgCGuGcGCGGCCaccggGUGCGCGC-CCg -3'
miRNA:   3'- cGCgGCuCaCGUCGG-----CACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 36580 0.68 0.680156
Target:  5'- cCGCCGAGcagGCGGuCCGcGUGCcacacgaGCGCCc -3'
miRNA:   3'- cGCGGCUCa--CGUC-GGCaCGCG-------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 36674 0.68 0.642397
Target:  5'- uGCGCC-AGUaGCAGCCGaagacgguccGCGUGCagACCu -3'
miRNA:   3'- -CGCGGcUCA-CGUCGGCa---------CGCGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 36857 0.66 0.747181
Target:  5'- uGUGCgGAGaccgccacUGCAGCCGcgccagguaGCGCGUGCa -3'
miRNA:   3'- -CGCGgCUC--------ACGUCGGCa--------CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 37407 0.68 0.681119
Target:  5'- aGCGCCcgcUGCAGCCG-GUccaGCGCCg -3'
miRNA:   3'- -CGCGGcucACGUCGGCaCGcg-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 37740 0.7 0.536533
Target:  5'- gGCGCCGccGGcgGCGGCgCG-GCG-GCGCCg -3'
miRNA:   3'- -CGCGGC--UCa-CGUCG-GCaCGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 38457 0.73 0.395856
Target:  5'- -aGCCG-GcGCGGCCGcgGCGCGC-CCu -3'
miRNA:   3'- cgCGGCuCaCGUCGGCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 39019 0.7 0.527148
Target:  5'- uGUGCUGGG-GCAagaucuacuuucGCCGggacgGCGgGCACCa -3'
miRNA:   3'- -CGCGGCUCaCGU------------CGGCa----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 39542 0.67 0.719257
Target:  5'- gGgGCUGcuGUGCGGCCucUGCG-GCGCCc -3'
miRNA:   3'- -CgCGGCu-CACGUCGGc-ACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 40304 0.68 0.655986
Target:  5'- cGCGCCGAGgagGgAcgguuuuccucacccGCCGcGCGgaCGCGCCa -3'
miRNA:   3'- -CGCGGCUCa--CgU---------------CGGCaCGC--GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 41251 0.66 0.774287
Target:  5'- cCGCCGAcgccgGCGGcCCGUcGuCGCGCuCCg -3'
miRNA:   3'- cGCGGCUca---CGUC-GGCA-C-GCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 41936 0.68 0.671475
Target:  5'- aGC-CCGaAGUGCAcGCCcucgGCGUGCGCg -3'
miRNA:   3'- -CGcGGC-UCACGU-CGGca--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 42643 0.68 0.642397
Target:  5'- -aGCgGAGUcGCGGCCGaagccgacgGCGC-CGCCg -3'
miRNA:   3'- cgCGgCUCA-CGUCGGCa--------CGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 43160 0.69 0.593876
Target:  5'- cGCGCaGAGcucgGCgacggaauAGCgGuUGCGCGCGCCg -3'
miRNA:   3'- -CGCGgCUCa---CG--------UCGgC-ACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 44225 0.69 0.584223
Target:  5'- gGCGCCGAGggcucGguGCCGgGCGgcucgGUGCCg -3'
miRNA:   3'- -CGCGGCUCa----CguCGGCaCGCg----CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 44423 0.7 0.536533
Target:  5'- gGCGCCGAGcgGCucgacgacaCCG-GCGCGC-CCg -3'
miRNA:   3'- -CGCGGCUCa-CGuc-------GGCaCGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 44539 0.68 0.671475
Target:  5'- cGCGCCGucGUcGUcGCCGgcgGCG-GCGCCc -3'
miRNA:   3'- -CGCGGCu-CA-CGuCGGCa--CGCgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.