miRNA display CGI


Results 41 - 60 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 44719 0.68 0.681119
Target:  5'- cGCGgCGAcGU-CGGCCG-GCGC-CGCCg -3'
miRNA:   3'- -CGCgGCU-CAcGUCGGCaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 45300 0.66 0.791798
Target:  5'- -aGgCGAcGUGCAGaUCGuUGCGCGCAaaguCCa -3'
miRNA:   3'- cgCgGCU-CACGUC-GGC-ACGCGCGU----GG- -5'
10738 3' -60.8 NC_002794.1 + 47411 0.68 0.63268
Target:  5'- cCGCCGucgGC-GCCGUcGCGCggaGCGCCa -3'
miRNA:   3'- cGCGGCucaCGuCGGCA-CGCG---CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 47741 0.73 0.379201
Target:  5'- cCGCCGGGUccacgugGCGGCCGUGguCGCgGCACa -3'
miRNA:   3'- cGCGGCUCA-------CGUCGGCAC--GCG-CGUGg -5'
10738 3' -60.8 NC_002794.1 + 47961 0.67 0.719257
Target:  5'- gGCGCCGGcuggGCGaCCGccGCGCGCuCCu -3'
miRNA:   3'- -CGCGGCUca--CGUcGGCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 48043 0.71 0.463414
Target:  5'- aCGCCGAGUGCGuGCUGgGCacgGCGCugaugGCCg -3'
miRNA:   3'- cGCGGCUCACGU-CGGCaCG---CGCG-----UGG- -5'
10738 3' -60.8 NC_002794.1 + 49014 0.7 0.555472
Target:  5'- cGCGCCGcG-GCGGCCGcgGCGuCGU-CCg -3'
miRNA:   3'- -CGCGGCuCaCGUCGGCa-CGC-GCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 53300 0.7 0.536533
Target:  5'- gGUGCCGAGcgGuCGGCCG-GCGC-CGCg -3'
miRNA:   3'- -CGCGGCUCa-C-GUCGGCaCGCGcGUGg -5'
10738 3' -60.8 NC_002794.1 + 53503 0.67 0.735169
Target:  5'- uCGCCGugGGUcGCccaguagauggagaAGCCGUGgGCGCGgCg -3'
miRNA:   3'- cGCGGC--UCA-CG--------------UCGGCACgCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 54226 0.68 0.657925
Target:  5'- aCGCCGucucggaugaaGCGGCCGaGCGCGCGguCCa -3'
miRNA:   3'- cGCGGCuca--------CGUCGGCaCGCGCGU--GG- -5'
10738 3' -60.8 NC_002794.1 + 54409 0.66 0.765356
Target:  5'- uCGCgGAGcucGCAGauGUGCGC-CACCu -3'
miRNA:   3'- cGCGgCUCa--CGUCggCACGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 55349 0.69 0.621992
Target:  5'- cGCGcCCGAG-GCGGCCGagGCG-GCcgaggcgGCCg -3'
miRNA:   3'- -CGC-GGCUCaCGUCGGCa-CGCgCG-------UGG- -5'
10738 3' -60.8 NC_002794.1 + 55403 0.68 0.642397
Target:  5'- gGCgGCCGAG-GCGGCCGagGCGaccccgGCGuCCg -3'
miRNA:   3'- -CG-CGGCUCaCGUCGGCa-CGCg-----CGU-GG- -5'
10738 3' -60.8 NC_002794.1 + 55644 0.7 0.565015
Target:  5'- cGgGCCGgcaGGcGCAGCCccgacaugGUGCGCGCCu -3'
miRNA:   3'- -CgCGGC---UCaCGUCGGca------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 55809 0.71 0.49938
Target:  5'- aGCGCCGGGcGCGG----GCGCGCGCUg -3'
miRNA:   3'- -CGCGGCUCaCGUCggcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 55971 0.66 0.756318
Target:  5'- -aGUCGAGguggauggcGUAGCCGcggGCGaGCACCa -3'
miRNA:   3'- cgCGGCUCa--------CGUCGGCa--CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 56091 0.73 0.379983
Target:  5'- -gGCCGc--GCAGCaCGUGCGUGCugCg -3'
miRNA:   3'- cgCGGCucaCGUCG-GCACGCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 56272 0.71 0.508567
Target:  5'- cGgGCCGAGcaGCAGgCGgcagagcacgaUGCGCGCGCg -3'
miRNA:   3'- -CgCGGCUCa-CGUCgGC-----------ACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 56919 0.7 0.545976
Target:  5'- gGCGCCG-G-GCuGCCG-GCcuCGCACCa -3'
miRNA:   3'- -CGCGGCuCaCGuCGGCaCGc-GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 57127 0.66 0.79524
Target:  5'- aGCGCgGccuGGUGCAcaacuuccugcucacGCUGcUGCGCaagGCGCCg -3'
miRNA:   3'- -CGCGgC---UCACGU---------------CGGC-ACGCG---CGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.