miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 57949 0.66 0.756318
Target:  5'- cGCGCUGc--GCAGCC-UGUGC-CACCc -3'
miRNA:   3'- -CGCGGCucaCGUCGGcACGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58014 0.69 0.621992
Target:  5'- cCGCCGGG-GCcGCCGccgGCGaacccgcCGCGCCg -3'
miRNA:   3'- cGCGGCUCaCGuCGGCa--CGC-------GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58147 0.68 0.668576
Target:  5'- cCGCCGccucGUGCAcuuuuaccagcgccGCCaggagGUGcCGCGCACCa -3'
miRNA:   3'- cGCGGCu---CACGU--------------CGG-----CAC-GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58437 0.67 0.700292
Target:  5'- aCGCCGAG-GCcacgcugcgccuGGCCGcGCugGCGCugCa -3'
miRNA:   3'- cGCGGCUCaCG------------UCGGCaCG--CGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 58530 0.75 0.275031
Target:  5'- aCGCCGAG-GCcuucGCCGcgGCGCGCGCg -3'
miRNA:   3'- cGCGGCUCaCGu---CGGCa-CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 58655 0.71 0.471391
Target:  5'- gGCGaCGGGcUGCugcagccGGCCGUGCacGCGCACUa -3'
miRNA:   3'- -CGCgGCUC-ACG-------UCGGCACG--CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58866 0.83 0.098131
Target:  5'- uCGCCGAccgGCAGCCGUGCGCGcCGCg -3'
miRNA:   3'- cGCGGCUca-CGUCGGCACGCGC-GUGg -5'
10738 3' -60.8 NC_002794.1 + 59053 0.66 0.756318
Target:  5'- cGCGCC---UGCGGCC-UGgGCcuGCACCu -3'
miRNA:   3'- -CGCGGcucACGUCGGcACgCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 59664 0.67 0.737954
Target:  5'- gGCGCUGcAGaGCcGCC-UGCGCcuGCACCc -3'
miRNA:   3'- -CGCGGC-UCaCGuCGGcACGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 60009 0.68 0.681119
Target:  5'- gGCGCCGAGcGCA-CCGaccUGCuCGaCGCCg -3'
miRNA:   3'- -CGCGGCUCaCGUcGGC---ACGcGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 60642 0.77 0.223976
Target:  5'- gGCGCCGGcgGC-GCCGgccacccgGCGCGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGuCGGCa-------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 61515 0.66 0.756318
Target:  5'- cCGCCGGacgGCGGCCGccgGCG-GcCGCCg -3'
miRNA:   3'- cGCGGCUca-CGUCGGCa--CGCgC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 61823 0.66 0.774287
Target:  5'- gGCgGCCGccgGCGGCCG-GCGUcacuccgcuccGCGCCc -3'
miRNA:   3'- -CG-CGGCucaCGUCGGCaCGCG-----------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 62683 0.73 0.364543
Target:  5'- cCGCCugcGGGUGCAGCUGUGUcgGCGgcCGCCg -3'
miRNA:   3'- cGCGG---CUCACGUCGGCACG--CGC--GUGG- -5'
10738 3' -60.8 NC_002794.1 + 65174 0.67 0.719257
Target:  5'- gGCGCCGAGaccggcgGguGCCG-GCGagguCGgACCc -3'
miRNA:   3'- -CGCGGCUCa------CguCGGCaCGC----GCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 68491 0.72 0.42045
Target:  5'- gGCgGCCGAGc-CGGCCGUGCGgGUgaucuGCCa -3'
miRNA:   3'- -CG-CGGCUCacGUCGGCACGCgCG-----UGG- -5'
10738 3' -60.8 NC_002794.1 + 69724 0.71 0.481234
Target:  5'- cCGUCGAGUGCcGCCGga-GCGCcacgGCCg -3'
miRNA:   3'- cGCGGCUCACGuCGGCacgCGCG----UGG- -5'
10738 3' -60.8 NC_002794.1 + 70003 0.71 0.463414
Target:  5'- cGCGCCGAccGaCAGCagGUGCGCGaucaGCCc -3'
miRNA:   3'- -CGCGGCUcaC-GUCGg-CACGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 70295 0.66 0.756318
Target:  5'- -gGCCGGG-GgGGCCcggGCGCGaagaGCCg -3'
miRNA:   3'- cgCGGCUCaCgUCGGca-CGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 71228 0.71 0.472281
Target:  5'- -gGCCGcguAGUgGCGGCCG-GCGUGgACCg -3'
miRNA:   3'- cgCGGC---UCA-CGUCGGCaCGCGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.