miRNA display CGI


Results 81 - 100 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 72053 0.67 0.728643
Target:  5'- cCGCUGAcccGCAGCCGguugccCGCGUGCCc -3'
miRNA:   3'- cGCGGCUca-CGUCGGCac----GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 72336 0.73 0.372209
Target:  5'- uGCaGUCG-GUGgAGCCGgugGCGCuGCACCg -3'
miRNA:   3'- -CG-CGGCuCACgUCGGCa--CGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 72885 0.68 0.661801
Target:  5'- -gGCCGGGUcGCGGCCcuccucgccaccGUcGCGCuCGCCg -3'
miRNA:   3'- cgCGGCUCA-CGUCGG------------CA-CGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 72925 0.66 0.756318
Target:  5'- cCGCCGuc-GgAGCCGgcgucCGCGCGCCc -3'
miRNA:   3'- cGCGGCucaCgUCGGCac---GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 74373 0.68 0.658895
Target:  5'- cGUGCuuCGGGgGCGGCCG-GCGCgacuacacgaccgaGCGCCu -3'
miRNA:   3'- -CGCG--GCUCaCGUCGGCaCGCG--------------CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 76559 0.72 0.412149
Target:  5'- cGCGCCGGGUacucacccgGCccGCCGc-CGCGCACCc -3'
miRNA:   3'- -CGCGGCUCA---------CGu-CGGCacGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 76828 0.67 0.709804
Target:  5'- aCGCCa---GCGGCCG-GCgauGCGCGCCg -3'
miRNA:   3'- cGCGGcucaCGUCGGCaCG---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 78684 0.74 0.349541
Target:  5'- cCGCCGGccgcauGUGCGGCCGacacgGCGC-CGCCa -3'
miRNA:   3'- cGCGGCU------CACGUCGGCa----CGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 80422 0.68 0.671475
Target:  5'- gGCGCCGGGcGgGGCCGccgccgGCG-GcCGCCg -3'
miRNA:   3'- -CGCGGCUCaCgUCGGCa-----CGCgC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 81224 0.66 0.745343
Target:  5'- uCGUCGuccccccgGGCCGcGCGCGCACCa -3'
miRNA:   3'- cGCGGCucacg---UCGGCaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 82672 0.72 0.43735
Target:  5'- cGCGCCGGcGgaucGCAcGCCGUucGCccgGCGCGCCg -3'
miRNA:   3'- -CGCGGCU-Ca---CGU-CGGCA--CG---CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 82713 0.66 0.791798
Target:  5'- cGCGCCGAGgac-GCC--GCGC-CACCa -3'
miRNA:   3'- -CGCGGCUCacguCGGcaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 86020 0.66 0.783103
Target:  5'- gGCGCCGAccGUGCGGCgGacagGCcucauCGgGCCg -3'
miRNA:   3'- -CGCGGCU--CACGUCGgCa---CGc----GCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 87866 0.73 0.387866
Target:  5'- cGCGuacCCGuGUGCGuauagucgcGCaCGUGCGCGUACCc -3'
miRNA:   3'- -CGC---GGCuCACGU---------CG-GCACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 89959 0.67 0.719257
Target:  5'- aCGUCGAGgcguuCGGaCCGUG-GUGCGCCg -3'
miRNA:   3'- cGCGGCUCac---GUC-GGCACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 90105 0.68 0.652107
Target:  5'- uGCGCCGcGGUGgGcGCCGUGaGUcuGUACCg -3'
miRNA:   3'- -CGCGGC-UCACgU-CGGCACgCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 90190 0.68 0.681119
Target:  5'- cGCGCgGGG-GCA-CgGUGCcCGCGCCu -3'
miRNA:   3'- -CGCGgCUCaCGUcGgCACGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 90354 0.73 0.372209
Target:  5'- uGCGUCcuGUGCA-CCGUGCGCGUGCa -3'
miRNA:   3'- -CGCGGcuCACGUcGGCACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 90477 0.67 0.709804
Target:  5'- cGCGgCGGG-GCcGCCGUcccGCGCGaucgGCCg -3'
miRNA:   3'- -CGCgGCUCaCGuCGGCA---CGCGCg---UGG- -5'
10738 3' -60.8 NC_002794.1 + 91112 0.73 0.379201
Target:  5'- aCGCCGGGcagcUGguGCCGUGCGUggaggagGCGCg -3'
miRNA:   3'- cGCGGCUC----ACguCGGCACGCG-------CGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.