miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 187917 0.68 0.684967
Target:  5'- cCGCCGGGccccGCcGCgaccgucgcgucacgCGUGCGCGCGCg -3'
miRNA:   3'- cGCGGCUCa---CGuCG---------------GCACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 187845 0.76 0.257046
Target:  5'- cGCGCCGAGggcucUGCccAGCCGcGCGCGgcuCGCCg -3'
miRNA:   3'- -CGCGGCUC-----ACG--UCGGCaCGCGC---GUGG- -5'
10738 3' -60.8 NC_002794.1 + 187579 0.67 0.737954
Target:  5'- cCGCCGucGGcGCGGCCGccGuCGCGaCGCCc -3'
miRNA:   3'- cGCGGC--UCaCGUCGGCa-C-GCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 187446 0.78 0.205918
Target:  5'- cGCGCCGucUGCcGCCGcucggcgucgcucgGCGCGCGCCg -3'
miRNA:   3'- -CGCGGCucACGuCGGCa-------------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 186956 0.67 0.700292
Target:  5'- cGgGCCGcugGCcGCCGccuccagcagcGCGCGCACCa -3'
miRNA:   3'- -CgCGGCucaCGuCGGCa----------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 186849 0.72 0.454635
Target:  5'- aGCGCgCGGGcGCuGCCGUGCaGCaGCAgCg -3'
miRNA:   3'- -CGCG-GCUCaCGuCGGCACG-CG-CGUgG- -5'
10738 3' -60.8 NC_002794.1 + 186645 0.71 0.472281
Target:  5'- cCGCgCGGGU-CGGCC--GCGCGCACCc -3'
miRNA:   3'- cGCG-GCUCAcGUCGGcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 186388 0.74 0.349541
Target:  5'- uCGCCGcAGccGCAGCCGcgGC-CGCACCa -3'
miRNA:   3'- cGCGGC-UCa-CGUCGGCa-CGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 186294 0.66 0.774287
Target:  5'- cGCgGCC-AG-GCGGCCGgucgccgcgGCGCGCucguCCu -3'
miRNA:   3'- -CG-CGGcUCaCGUCGGCa--------CGCGCGu---GG- -5'
10738 3' -60.8 NC_002794.1 + 185468 0.66 0.783103
Target:  5'- aCGCCGcGGgcgGCGGCCGcgGCGaggGgACCg -3'
miRNA:   3'- cGCGGC-UCa--CGUCGGCa-CGCg--CgUGG- -5'
10738 3' -60.8 NC_002794.1 + 184954 0.66 0.783978
Target:  5'- uGCGCCGGcccGcGCAGCCGcucgucgggcagcacGCaGCGCGCg -3'
miRNA:   3'- -CGCGGCU---CaCGUCGGCa--------------CG-CGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 184571 0.67 0.737027
Target:  5'- cGCGCCGccgcggcGGcgGCGGCCacGCGCG-GCCg -3'
miRNA:   3'- -CGCGGC-------UCa-CGUCGGcaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 184078 0.68 0.661801
Target:  5'- cGCGCCcacGGUGUAGCgGcagaacgGCGaaCGCGCCa -3'
miRNA:   3'- -CGCGGc--UCACGUCGgCa------CGC--GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 183608 0.7 0.536533
Target:  5'- gGgGCCGcGcGCGGCCG-GCGCccccGCGCCc -3'
miRNA:   3'- -CgCGGCuCaCGUCGGCaCGCG----CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 183509 0.79 0.172734
Target:  5'- gGCcCCGAGacccaugucGCGGCCGUGCGCGCcCCg -3'
miRNA:   3'- -CGcGGCUCa--------CGUCGGCACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 183003 0.69 0.622964
Target:  5'- uCGCCGcGG-GC-GCCccGCGCGCGCCc -3'
miRNA:   3'- cGCGGC-UCaCGuCGGcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 180292 0.67 0.719257
Target:  5'- cGCGCCGcc-GCAacacGCCGgccgGCGCG-ACCa -3'
miRNA:   3'- -CGCGGCucaCGU----CGGCa---CGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 179436 0.66 0.768942
Target:  5'- gGCGCgGAG-GCguggaccaccgccucGGUCGUgauguucaGCGCGCACUc -3'
miRNA:   3'- -CGCGgCUCaCG---------------UCGGCA--------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 179352 0.68 0.681119
Target:  5'- aCG-UGGGUaCAGaCCGUGCGCGC-CCg -3'
miRNA:   3'- cGCgGCUCAcGUC-GGCACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 175111 0.66 0.764457
Target:  5'- aCGgUGAGgaucuucUGC-GCUGUGCGUGCACUc -3'
miRNA:   3'- cGCgGCUC-------ACGuCGGCACGCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.