miRNA display CGI


Results 41 - 60 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 157666 0.73 0.379983
Target:  5'- cGCGCUGGcgGCuugGGCCGcuugGCGUGCACCg -3'
miRNA:   3'- -CGCGGCUcaCG---UCGGCa---CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 156045 0.7 0.545976
Target:  5'- cGCGCgaCGGGgGCAGCCGUGUcgaauagagcggGCGUugGCCc -3'
miRNA:   3'- -CGCG--GCUCaCGUCGGCACG------------CGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 154337 0.68 0.661801
Target:  5'- cGUcCCGGGUGCcgcGGCCGagcucccGCGCGguCCa -3'
miRNA:   3'- -CGcGGCUCACG---UCGGCa------CGCGCguGG- -5'
10738 3' -60.8 NC_002794.1 + 152579 0.68 0.648224
Target:  5'- cCGCCGcG-GCGGCCGccacgucccugcgGCGCGgGCCc -3'
miRNA:   3'- cGCGGCuCaCGUCGGCa------------CGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 152220 0.71 0.508567
Target:  5'- gGCGUCGGacGUcGCGcGCCacGUcGCGCGCACCg -3'
miRNA:   3'- -CGCGGCU--CA-CGU-CGG--CA-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 151563 0.67 0.719257
Target:  5'- uGCuGCUGAcGUaGCGccccCCGgcgGCGCGCGCCg -3'
miRNA:   3'- -CG-CGGCU-CA-CGUc---GGCa--CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 150219 0.66 0.745343
Target:  5'- uGCuGCCGAGcugcgugcgacgGCAGCUGgaaGCGCugCg -3'
miRNA:   3'- -CG-CGGCUCa-----------CGUCGGCacgCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 150036 0.73 0.40395
Target:  5'- cCGCCGAGUGgAGCCGcuaccgacUGCggugggacgaGCGCGCUc -3'
miRNA:   3'- cGCGGCUCACgUCGGC--------ACG----------CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 149975 0.66 0.774287
Target:  5'- cUGCCGcGgaccgGCGGCCGcuaucUGcCGCGCugCu -3'
miRNA:   3'- cGCGGCuCa----CGUCGGC-----AC-GCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 149656 0.67 0.728643
Target:  5'- uCGCCGAGga-GGCCGagcggggGCGCGuCGCg -3'
miRNA:   3'- cGCGGCUCacgUCGGCa------CGCGC-GUGg -5'
10738 3' -60.8 NC_002794.1 + 148529 0.67 0.728643
Target:  5'- uGCGCCGcuucccGUGCcucGUCGgcUGCGCGCGgCu -3'
miRNA:   3'- -CGCGGCu-----CACGu--CGGC--ACGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 147681 0.71 0.462532
Target:  5'- cGCGCuCGAGgacccggcggcgaUGCGGCgcaCGUGCGCcaGUACCg -3'
miRNA:   3'- -CGCG-GCUC-------------ACGUCG---GCACGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145964 0.66 0.765356
Target:  5'- aGCGCCcAGcGC-GCCcaGCGCGC-CCa -3'
miRNA:   3'- -CGCGGcUCaCGuCGGcaCGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 145921 0.66 0.791798
Target:  5'- cGCGCCGAGcggaGgGGCCG-GCGagaGCGg- -3'
miRNA:   3'- -CGCGGCUCa---CgUCGGCaCGCg--CGUgg -5'
10738 3' -60.8 NC_002794.1 + 145818 0.66 0.747181
Target:  5'- cCGCCGGcgGCgAGCCGaGCGCGUcgacggucGCCa -3'
miRNA:   3'- cGCGGCUcaCG-UCGGCaCGCGCG--------UGG- -5'
10738 3' -60.8 NC_002794.1 + 145401 0.7 0.555472
Target:  5'- cGCGCCGc--GCGGCCuuaaagcGCgGCGCGCCg -3'
miRNA:   3'- -CGCGGCucaCGUCGGca-----CG-CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145217 0.7 0.527148
Target:  5'- aGCGCUccuucGUGguGUCGgagGCGCGCGCg -3'
miRNA:   3'- -CGCGGcu---CACguCGGCa--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 145119 0.71 0.49938
Target:  5'- gGUGUCGGG-GCAGCUcaugcUGCGgGCGCCc -3'
miRNA:   3'- -CGCGGCUCaCGUCGGc----ACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 144435 1.12 0.000889
Target:  5'- uGCGCCGAGUGCAGCCGUGCGCGCACCu -3'
miRNA:   3'- -CGCGGCUCACGUCGGCACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 143545 0.73 0.372209
Target:  5'- gGCGCgGcacgagcacGGUGgccCAGCCGUGCGCGCcguCCu -3'
miRNA:   3'- -CGCGgC---------UCAC---GUCGGCACGCGCGu--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.