miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 142811 0.67 0.737954
Target:  5'- -gGCCGGGU-CGGCCucguucaacgcGUGCGCGUucagguucaggGCCu -3'
miRNA:   3'- cgCGGCUCAcGUCGG-----------CACGCGCG-----------UGG- -5'
10738 3' -60.8 NC_002794.1 + 142560 0.68 0.671475
Target:  5'- cGCGCCccggauGGGauagaGCAGCgCGaUGgGCGCGCCc -3'
miRNA:   3'- -CGCGG------CUCa----CGUCG-GC-ACgCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 142471 0.67 0.719257
Target:  5'- aGCGCCGGcaccGUGGaCgCGUGCG-GCGCCg -3'
miRNA:   3'- -CGCGGCUca--CGUC-G-GCACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 141439 0.72 0.43735
Target:  5'- gGCGCCGGGgGC-GCCGggagcgGCGCgGCGuCCg -3'
miRNA:   3'- -CGCGGCUCaCGuCGGCa-----CGCG-CGU-GG- -5'
10738 3' -60.8 NC_002794.1 + 140956 0.68 0.649195
Target:  5'- cGCGCgGAGUGCgugagguuGGCCGagcgGaaccacggcuucgcCGCGCACUa -3'
miRNA:   3'- -CGCGgCUCACG--------UCGGCa---C--------------GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 140909 0.66 0.765356
Target:  5'- cGUGgCGGGaccUGCAGgCGcgcUGCcuGCGCACCa -3'
miRNA:   3'- -CGCgGCUC---ACGUCgGC---ACG--CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 139449 0.74 0.320876
Target:  5'- cGCGCCGAucgGCAgGUCGU-CGUGCGCCa -3'
miRNA:   3'- -CGCGGCUca-CGU-CGGCAcGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 138936 0.66 0.765356
Target:  5'- cUGCCG-GUGCGcccccaCCGUgGCGUGCugCg -3'
miRNA:   3'- cGCGGCuCACGUc-----GGCA-CGCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 137993 0.8 0.145822
Target:  5'- aGCGCUG-GUGCAGCUGgGCGCGCAg- -3'
miRNA:   3'- -CGCGGCuCACGUCGGCaCGCGCGUgg -5'
10738 3' -60.8 NC_002794.1 + 137650 0.66 0.774287
Target:  5'- gGCGCCGGGccuccgGC-GCCGcugGUGCGgACg -3'
miRNA:   3'- -CGCGGCUCa-----CGuCGGCa--CGCGCgUGg -5'
10738 3' -60.8 NC_002794.1 + 135711 0.66 0.786596
Target:  5'- aGCGCuCGAGcugcugcguagcaucUGCAccuGCCGcGC-CGCGCCc -3'
miRNA:   3'- -CGCG-GCUC---------------ACGU---CGGCaCGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 130459 0.7 0.536533
Target:  5'- gGCGgCGAGgcgcugGCGGCU-UGCGUGCGCg -3'
miRNA:   3'- -CGCgGCUCa-----CGUCGGcACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 129028 0.65 0.797807
Target:  5'- cCGCCGucucggcgaacugucUGCGGUCGUG-GCGCGCg -3'
miRNA:   3'- cGCGGCuc-------------ACGUCGGCACgCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 127495 0.65 0.797807
Target:  5'- uGCGCCGGGaaaugcucaggagcUGgGGCUGUGcCGcCGCGauCCu -3'
miRNA:   3'- -CGCGGCUC--------------ACgUCGGCAC-GC-GCGU--GG- -5'
10738 3' -60.8 NC_002794.1 + 127343 0.66 0.774287
Target:  5'- cGCuGCCGAGacgcucGCGGCgGcgGCGCG-GCCg -3'
miRNA:   3'- -CG-CGGCUCa-----CGUCGgCa-CGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 126614 0.71 0.472281
Target:  5'- gGCGCCGAcGUcGCGG-CGUGaGCGCgACCg -3'
miRNA:   3'- -CGCGGCU-CA-CGUCgGCACgCGCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 126383 0.73 0.379983
Target:  5'- gGCGCCGGGgccugcGCGGCgGcGUGCGCGgCg -3'
miRNA:   3'- -CGCGGCUCa-----CGUCGgCaCGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 126296 0.7 0.536533
Target:  5'- uGCGCCGcgcgccuggcGGUGCAGCgGaGCGUG-ACCc -3'
miRNA:   3'- -CGCGGC----------UCACGUCGgCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 126253 0.72 0.454635
Target:  5'- gGCGCgCGAGgucgGCGGCUGgcugGCG-GCGCUg -3'
miRNA:   3'- -CGCG-GCUCa---CGUCGGCa---CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 125746 0.66 0.791798
Target:  5'- cGgGCCGcGGgacgGCGGCCG-GCGgCuCGCCa -3'
miRNA:   3'- -CgCGGC-UCa---CGUCGGCaCGC-GcGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.