Results 81 - 100 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10738 | 3' | -60.8 | NC_002794.1 | + | 175111 | 0.66 | 0.764457 |
Target: 5'- aCGgUGAGgaucuucUGC-GCUGUGCGUGCACUc -3' miRNA: 3'- cGCgGCUC-------ACGuCGGCACGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 91637 | 0.66 | 0.762655 |
Target: 5'- uGCGCCGccuguccgagcugaAGcUGCAccugucggcGCaCGUGgGCGCGCUg -3' miRNA: 3'- -CGCGGC--------------UC-ACGU---------CG-GCACgCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 72925 | 0.66 | 0.756318 |
Target: 5'- cCGCCGuc-GgAGCCGgcgucCGCGCGCCc -3' miRNA: 3'- cGCGGCucaCgUCGGCac---GCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 105635 | 0.66 | 0.756318 |
Target: 5'- aGC-CCGAGUacGCGuucuccgucucGCCGcgGCGCGCuCCg -3' miRNA: 3'- -CGcGGCUCA--CGU-----------CGGCa-CGCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 34080 | 0.66 | 0.756318 |
Target: 5'- cCGCCGGcGgccggGCAGCCGU-CGgGCgGCCc -3' miRNA: 3'- cGCGGCU-Ca----CGUCGGCAcGCgCG-UGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 61515 | 0.66 | 0.756318 |
Target: 5'- cCGCCGGacgGCGGCCGccgGCG-GcCGCCg -3' miRNA: 3'- cGCGGCUca-CGUCGGCa--CGCgC-GUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 194915 | 0.66 | 0.756318 |
Target: 5'- uCGCCGAcaGCAGCg--GC-CGCACCa -3' miRNA: 3'- cGCGGCUcaCGUCGgcaCGcGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 145964 | 0.66 | 0.765356 |
Target: 5'- aGCGCCcAGcGC-GCCcaGCGCGC-CCa -3' miRNA: 3'- -CGCGGcUCaCGuCGGcaCGCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 94284 | 0.66 | 0.765356 |
Target: 5'- cGCGgcCCGAGcgggggGCGGCUc-GgGCGCGCCg -3' miRNA: 3'- -CGC--GGCUCa-----CGUCGGcaCgCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 104616 | 0.66 | 0.765356 |
Target: 5'- cGCGCagcuCGGccaGCAGCuCGuUGuCGCGCGCCg -3' miRNA: 3'- -CGCG----GCUca-CGUCG-GC-AC-GCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 101033 | 0.66 | 0.774287 |
Target: 5'- cGgGCCGGGcGCgggucGGCCGcuacUGCGUGCaggacGCCg -3' miRNA: 3'- -CgCGGCUCaCG-----UCGGC----ACGCGCG-----UGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 26094 | 0.66 | 0.774287 |
Target: 5'- aGCGCCGAcGgccccgGCGaucGCCGUGgGCcUGCCu -3' miRNA: 3'- -CGCGGCU-Ca-----CGU---CGGCACgCGcGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 61823 | 0.66 | 0.774287 |
Target: 5'- gGCgGCCGccgGCGGCCG-GCGUcacuccgcuccGCGCCc -3' miRNA: 3'- -CG-CGGCucaCGUCGGCaCGCG-----------CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 92813 | 0.66 | 0.774287 |
Target: 5'- gGCGCCaAGUGCAGCaagaGCGUggaguucgaGCGCUu -3' miRNA: 3'- -CGCGGcUCACGUCGgca-CGCG---------CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 179436 | 0.66 | 0.768942 |
Target: 5'- gGCGCgGAG-GCguggaccaccgccucGGUCGUgauguucaGCGCGCACUc -3' miRNA: 3'- -CGCGgCUCaCG---------------UCGGCA--------CGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 12693 | 0.66 | 0.774287 |
Target: 5'- aGCGCCuguucaUGuCGGCCGUGgGCuGCGCg -3' miRNA: 3'- -CGCGGcuc---AC-GUCGGCACgCG-CGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 188272 | 0.66 | 0.765356 |
Target: 5'- cGgGCCGGGUaGCGGaugcaGggcGcCGCGCGCCg -3' miRNA: 3'- -CgCGGCUCA-CGUCgg---Ca--C-GCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 138936 | 0.66 | 0.765356 |
Target: 5'- cUGCCG-GUGCGcccccaCCGUgGCGUGCugCg -3' miRNA: 3'- cGCGGCuCACGUc-----GGCA-CGCGCGugG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 121034 | 0.66 | 0.765356 |
Target: 5'- -gGCCgGAGaGCGGCgCGU-CGgGCGCCg -3' miRNA: 3'- cgCGG-CUCaCGUCG-GCAcGCgCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 117634 | 0.66 | 0.765356 |
Target: 5'- gGCGCCGAccGcGCGGCCccgGaCGaagaGCGCCa -3' miRNA: 3'- -CGCGGCU--CaCGUCGGca-C-GCg---CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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