Results 61 - 80 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10738 | 3' | -60.8 | NC_002794.1 | + | 111320 | 0.66 | 0.783103 |
Target: 5'- aCGCCGGGc-CAGCg--GCGCGgGCCg -3' miRNA: 3'- cGCGGCUCacGUCGgcaCGCGCgUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 124856 | 0.66 | 0.774287 |
Target: 5'- cCGCCGAcuucaccauggaGUuCAGCucggCGUGCGUGCACg -3' miRNA: 3'- cGCGGCU------------CAcGUCG----GCACGCGCGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 12693 | 0.66 | 0.774287 |
Target: 5'- aGCGCCuguucaUGuCGGCCGUGgGCuGCGCg -3' miRNA: 3'- -CGCGGcuc---AC-GUCGGCACgCG-CGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 188272 | 0.66 | 0.765356 |
Target: 5'- cGgGCCGGGUaGCGGaugcaGggcGcCGCGCGCCg -3' miRNA: 3'- -CgCGGCUCA-CGUCgg---Ca--C-GCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 138936 | 0.66 | 0.765356 |
Target: 5'- cUGCCG-GUGCGcccccaCCGUgGCGUGCugCg -3' miRNA: 3'- cGCGGCuCACGUc-----GGCA-CGCGCGugG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 121034 | 0.66 | 0.765356 |
Target: 5'- -gGCCgGAGaGCGGCgCGU-CGgGCGCCg -3' miRNA: 3'- cgCGG-CUCaCGUCG-GCAcGCgCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 117634 | 0.66 | 0.765356 |
Target: 5'- gGCGCCGAccGcGCGGCCccgGaCGaagaGCGCCa -3' miRNA: 3'- -CGCGGCU--CaCGUCGGca-C-GCg---CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 104616 | 0.66 | 0.765356 |
Target: 5'- cGCGCagcuCGGccaGCAGCuCGuUGuCGCGCGCCg -3' miRNA: 3'- -CGCG----GCUca-CGUCG-GC-AC-GCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 94284 | 0.66 | 0.765356 |
Target: 5'- cGCGgcCCGAGcgggggGCGGCUc-GgGCGCGCCg -3' miRNA: 3'- -CGC--GGCUCa-----CGUCGGcaCgCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 145964 | 0.66 | 0.765356 |
Target: 5'- aGCGCCcAGcGC-GCCcaGCGCGC-CCa -3' miRNA: 3'- -CGCGGcUCaCGuCGGcaCGCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 179436 | 0.66 | 0.768942 |
Target: 5'- gGCGCgGAG-GCguggaccaccgccucGGUCGUgauguucaGCGCGCACUc -3' miRNA: 3'- -CGCGgCUCaCG---------------UCGGCA--------CGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 92813 | 0.66 | 0.774287 |
Target: 5'- gGCGCCaAGUGCAGCaagaGCGUggaguucgaGCGCUu -3' miRNA: 3'- -CGCGGcUCACGUCGgca-CGCG---------CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 41251 | 0.66 | 0.774287 |
Target: 5'- cCGCCGAcgccgGCGGcCCGUcGuCGCGCuCCg -3' miRNA: 3'- cGCGGCUca---CGUC-GGCA-C-GCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 186294 | 0.66 | 0.774287 |
Target: 5'- cGCgGCC-AG-GCGGCCGgucgccgcgGCGCGCucguCCu -3' miRNA: 3'- -CG-CGGcUCaCGUCGGCa--------CGCGCGu---GG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 137650 | 0.66 | 0.774287 |
Target: 5'- gGCGCCGGGccuccgGC-GCCGcugGUGCGgACg -3' miRNA: 3'- -CGCGGCUCa-----CGuCGGCa--CGCGCgUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 149975 | 0.66 | 0.774287 |
Target: 5'- cUGCCGcGgaccgGCGGCCGcuaucUGcCGCGCugCu -3' miRNA: 3'- cGCGGCuCa----CGUCGGC-----AC-GCGCGugG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 127343 | 0.66 | 0.774287 |
Target: 5'- cGCuGCCGAGacgcucGCGGCgGcgGCGCG-GCCg -3' miRNA: 3'- -CG-CGGCUCa-----CGUCGgCa-CGCGCgUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 101033 | 0.66 | 0.774287 |
Target: 5'- cGgGCCGGGcGCgggucGGCCGcuacUGCGUGCaggacGCCg -3' miRNA: 3'- -CgCGGCUCaCG-----UCGGC----ACGCGCG-----UGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 26094 | 0.66 | 0.774287 |
Target: 5'- aGCGCCGAcGgccccgGCGaucGCCGUGgGCcUGCCu -3' miRNA: 3'- -CGCGGCU-Ca-----CGU---CGGCACgCGcGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 61823 | 0.66 | 0.774287 |
Target: 5'- gGCgGCCGccgGCGGCCG-GCGUcacuccgcuccGCGCCc -3' miRNA: 3'- -CG-CGGCucaCGUCGGCaCGCG-----------CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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