miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 130633 0.65 0.992099
Target:  5'- uUCGGCG-UCgccgGCCCGcccgccgcCCCGCCg -3'
miRNA:   3'- -GGCUGCaAGa---UGGGCuacau---GGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 182994 0.65 0.992099
Target:  5'- gCCGGCGcUUCgccgcgggcgcCCCGcgcGcGCCCGCCg -3'
miRNA:   3'- -GGCUGC-AAGau---------GGGCua-CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 150993 0.65 0.991889
Target:  5'- aCGACGagCUcGCCCGcuucaacuucgaGUGCUCGCCc -3'
miRNA:   3'- gGCUGCaaGA-UGGGCua----------CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 111833 0.66 0.991232
Target:  5'- -aGGCGcggaacgUCUGCCCGAga-GCCguCGCCa -3'
miRNA:   3'- ggCUGCa------AGAUGGGCUacaUGG--GCGG- -5'
10738 5' -53.5 NC_002794.1 + 10354 0.66 0.991232
Target:  5'- gUGACGgaCUGCUCGAcgGUggAUCCGCa -3'
miRNA:   3'- gGCUGCaaGAUGGGCUa-CA--UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 12371 0.66 0.991232
Target:  5'- cUCGGCGUgCUcGCCUGccGcGCUCGCCu -3'
miRNA:   3'- -GGCUGCAaGA-UGGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 19472 0.66 0.991232
Target:  5'- gCGGCGgg--ACCCGccgGUcGCCCGCa -3'
miRNA:   3'- gGCUGCaagaUGGGCua-CA-UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 145332 0.66 0.991232
Target:  5'- gCGGCGcUCggGCCCGAgcggGCCCGa- -3'
miRNA:   3'- gGCUGCaAGa-UGGGCUaca-UGGGCgg -5'
10738 5' -53.5 NC_002794.1 + 125038 0.66 0.991232
Target:  5'- aCGGCGcagauCCUGGUGcacgcgaACCCGCCg -3'
miRNA:   3'- gGCUGCaagauGGGCUACa------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 96187 0.66 0.991232
Target:  5'- aCCGGCGc-CUGCcggCCGA-GUcCCUGCCg -3'
miRNA:   3'- -GGCUGCaaGAUG---GGCUaCAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 62546 0.66 0.991232
Target:  5'- cCCGACGccc-AUCCGG---ACCCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 191523 0.66 0.991232
Target:  5'- gCCGGgCGUcg-GCCCGcgccuCCCGCCg -3'
miRNA:   3'- -GGCU-GCAagaUGGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 191182 0.66 0.991232
Target:  5'- aUCGuCGcgCUcGCCCGGcc-GCCCGCCc -3'
miRNA:   3'- -GGCuGCaaGA-UGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 186051 0.66 0.991232
Target:  5'- gCCGuCGUUC--CCCGGUccGUGgccaCCGCCg -3'
miRNA:   3'- -GGCuGCAAGauGGGCUA--CAUg---GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 186353 0.66 0.991232
Target:  5'- gCGACGU---GCCCGAcc-AgCCGCCg -3'
miRNA:   3'- gGCUGCAagaUGGGCUacaUgGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 109411 0.66 0.991118
Target:  5'- gCGACGccg-GCCCG-UGUACgugcacugagggaCCGCCg -3'
miRNA:   3'- gGCUGCaagaUGGGCuACAUG-------------GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 117003 0.66 0.990044
Target:  5'- gCGGCG-UCUcGCCCag-GUACCaGCCg -3'
miRNA:   3'- gGCUGCaAGA-UGGGcuaCAUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 137437 0.66 0.990044
Target:  5'- gCCGGCGcUCUggaacgACUCGGcgGaAUCCGCCg -3'
miRNA:   3'- -GGCUGCaAGA------UGGGCUa-CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 50333 0.66 0.990044
Target:  5'- gUCGAUGUUggGCUCGGUcaccgGCuCCGCCa -3'
miRNA:   3'- -GGCUGCAAgaUGGGCUAca---UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 102044 0.66 0.989919
Target:  5'- gCCGGCGUUCcucGCgcgcuucuucgagCCGGgcgACCUGCCg -3'
miRNA:   3'- -GGCUGCAAGa--UG-------------GGCUacaUGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.