Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 144472 | 1.15 | 0.003619 |
Target: 5'- cCCGACGUUCUACCCGAUGUACCCGCCg -3' miRNA: 3'- -GGCUGCAAGAUGGGCUACAUGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 52600 | 0.8 | 0.433669 |
Target: 5'- gCCGACG-UCcGCCCGAgacGCCCGCCc -3' miRNA: 3'- -GGCUGCaAGaUGGGCUacaUGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 83756 | 0.79 | 0.493529 |
Target: 5'- cCUGGCGUUCUGCCCGuacgacgacgACgCCGCCg -3' miRNA: 3'- -GGCUGCAAGAUGGGCuaca------UG-GGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 135449 | 0.76 | 0.654361 |
Target: 5'- cCCGACGggCU-CCCGGg--GCCCGCg -3' miRNA: 3'- -GGCUGCaaGAuGGGCUacaUGGGCGg -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 99761 | 0.75 | 0.69406 |
Target: 5'- gCCGACGUUgcCgccGCCCGcgGUGCCgGCg -3' miRNA: 3'- -GGCUGCAA--Ga--UGGGCuaCAUGGgCGg -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 122371 | 0.75 | 0.703882 |
Target: 5'- aCGGCGgcagCUACCUGAagGUGCUgGCCa -3' miRNA: 3'- gGCUGCaa--GAUGGGCUa-CAUGGgCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 75831 | 0.75 | 0.684189 |
Target: 5'- aCGACGUaCaACCCGAUGUGuacaaccuCCCGCg -3' miRNA: 3'- gGCUGCAaGaUGGGCUACAU--------GGGCGg -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 14933 | 0.75 | 0.723344 |
Target: 5'- cCCGACGUgCU-CUCGAUcGgcucGCCCGCCg -3' miRNA: 3'- -GGCUGCAaGAuGGGCUA-Ca---UGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 189589 | 0.75 | 0.721411 |
Target: 5'- gCCGGCGccccuuagcccgUCcGCCCGAg--ACCCGCCg -3' miRNA: 3'- -GGCUGCa-----------AGaUGGGCUacaUGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 195461 | 0.74 | 0.77966 |
Target: 5'- aCCGACGccccgcUUGCCCGGacucGCCCGCCg -3' miRNA: 3'- -GGCUGCaa----GAUGGGCUaca-UGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 135491 | 0.73 | 0.797512 |
Target: 5'- gUCGACGcgCgcggGCCCGAU--GCCCGCa -3' miRNA: 3'- -GGCUGCaaGa---UGGGCUAcaUGGGCGg -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 141716 | 0.73 | 0.788653 |
Target: 5'- aCCGGCGUUCgccgAUCCGAUGcaaCCGUa -3' miRNA: 3'- -GGCUGCAAGa---UGGGCUACaugGGCGg -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 32501 | 0.73 | 0.797512 |
Target: 5'- cUCGACG-UCUugCCGGcu--CCCGCCg -3' miRNA: 3'- -GGCUGCaAGAugGGCUacauGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 77909 | 0.73 | 0.814795 |
Target: 5'- cCCGGCcccGUUCgACCCGGUccgccgaaACCCGCCg -3' miRNA: 3'- -GGCUG---CAAGaUGGGCUAca------UGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 11987 | 0.73 | 0.797512 |
Target: 5'- uCCGGCGgcugguugCUGCuguguggaCUGAUGUGCgCCGCCg -3' miRNA: 3'- -GGCUGCaa------GAUG--------GGCUACAUG-GGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 189747 | 0.72 | 0.847403 |
Target: 5'- uCCGGCaGUUCggcACUCGGUuucgGUGCaCCGCCa -3' miRNA: 3'- -GGCUG-CAAGa--UGGGCUA----CAUG-GGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 51190 | 0.72 | 0.839514 |
Target: 5'- gCCGAuCGUUCUcguucgcucGCCCGcgGagcgGCCgGCCg -3' miRNA: 3'- -GGCU-GCAAGA---------UGGGCuaCa---UGGgCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 100244 | 0.71 | 0.897091 |
Target: 5'- gUCGGCG-UCaGCCCGcUG-ACCCGCUu -3' miRNA: 3'- -GGCUGCaAGaUGGGCuACaUGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 80441 | 0.71 | 0.869927 |
Target: 5'- gCCGGCGgcCgccgGCCCGucgGcgGCCCGCUg -3' miRNA: 3'- -GGCUGCaaGa---UGGGCua-Ca-UGGGCGG- -5' |
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10738 | 5' | -53.5 | NC_002794.1 | + | 105453 | 0.71 | 0.883935 |
Target: 5'- gCCGuCGUUCUGCCCGuucUGggacgACgaGCCg -3' miRNA: 3'- -GGCuGCAAGAUGGGCu--ACa----UGggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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