miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 144472 1.15 0.003619
Target:  5'- cCCGACGUUCUACCCGAUGUACCCGCCg -3'
miRNA:   3'- -GGCUGCAAGAUGGGCUACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 52600 0.8 0.433669
Target:  5'- gCCGACG-UCcGCCCGAgacGCCCGCCc -3'
miRNA:   3'- -GGCUGCaAGaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 83756 0.79 0.493529
Target:  5'- cCUGGCGUUCUGCCCGuacgacgacgACgCCGCCg -3'
miRNA:   3'- -GGCUGCAAGAUGGGCuaca------UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 135449 0.76 0.654361
Target:  5'- cCCGACGggCU-CCCGGg--GCCCGCg -3'
miRNA:   3'- -GGCUGCaaGAuGGGCUacaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 75831 0.75 0.684189
Target:  5'- aCGACGUaCaACCCGAUGUGuacaaccuCCCGCg -3'
miRNA:   3'- gGCUGCAaGaUGGGCUACAU--------GGGCGg -5'
10738 5' -53.5 NC_002794.1 + 99761 0.75 0.69406
Target:  5'- gCCGACGUUgcCgccGCCCGcgGUGCCgGCg -3'
miRNA:   3'- -GGCUGCAA--Ga--UGGGCuaCAUGGgCGg -5'
10738 5' -53.5 NC_002794.1 + 122371 0.75 0.703882
Target:  5'- aCGGCGgcagCUACCUGAagGUGCUgGCCa -3'
miRNA:   3'- gGCUGCaa--GAUGGGCUa-CAUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 189589 0.75 0.721411
Target:  5'- gCCGGCGccccuuagcccgUCcGCCCGAg--ACCCGCCg -3'
miRNA:   3'- -GGCUGCa-----------AGaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 14933 0.75 0.723344
Target:  5'- cCCGACGUgCU-CUCGAUcGgcucGCCCGCCg -3'
miRNA:   3'- -GGCUGCAaGAuGGGCUA-Ca---UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 195461 0.74 0.77966
Target:  5'- aCCGACGccccgcUUGCCCGGacucGCCCGCCg -3'
miRNA:   3'- -GGCUGCaa----GAUGGGCUaca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 141716 0.73 0.788653
Target:  5'- aCCGGCGUUCgccgAUCCGAUGcaaCCGUa -3'
miRNA:   3'- -GGCUGCAAGa---UGGGCUACaugGGCGg -5'
10738 5' -53.5 NC_002794.1 + 135491 0.73 0.797512
Target:  5'- gUCGACGcgCgcggGCCCGAU--GCCCGCa -3'
miRNA:   3'- -GGCUGCaaGa---UGGGCUAcaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 32501 0.73 0.797512
Target:  5'- cUCGACG-UCUugCCGGcu--CCCGCCg -3'
miRNA:   3'- -GGCUGCaAGAugGGCUacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 11987 0.73 0.797512
Target:  5'- uCCGGCGgcugguugCUGCuguguggaCUGAUGUGCgCCGCCg -3'
miRNA:   3'- -GGCUGCaa------GAUG--------GGCUACAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 77909 0.73 0.814795
Target:  5'- cCCGGCcccGUUCgACCCGGUccgccgaaACCCGCCg -3'
miRNA:   3'- -GGCUG---CAAGaUGGGCUAca------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 51190 0.72 0.839514
Target:  5'- gCCGAuCGUUCUcguucgcucGCCCGcgGagcgGCCgGCCg -3'
miRNA:   3'- -GGCU-GCAAGA---------UGGGCuaCa---UGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 189747 0.72 0.847403
Target:  5'- uCCGGCaGUUCggcACUCGGUuucgGUGCaCCGCCa -3'
miRNA:   3'- -GGCUG-CAAGa--UGGGCUA----CAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 112194 0.71 0.869927
Target:  5'- gUCGAgGUacgUCUGCCCG-UGgagcacgGCCCGCUc -3'
miRNA:   3'- -GGCUgCA---AGAUGGGCuACa------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80441 0.71 0.869927
Target:  5'- gCCGGCGgcCgccgGCCCGucgGcgGCCCGCUg -3'
miRNA:   3'- -GGCUGCaaGa---UGGGCua-Ca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 58803 0.71 0.881887
Target:  5'- aCCGGCGccUCUACCCGcccuuccucaaccGCCUGCCg -3'
miRNA:   3'- -GGCUGCa-AGAUGGGCuaca---------UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.