miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 105453 0.71 0.883935
Target:  5'- gCCGuCGUUCUGCCCGuucUGggacgACgaGCCg -3'
miRNA:   3'- -GGCuGCAAGAUGGGCu--ACa----UGggCGG- -5'
10738 5' -53.5 NC_002794.1 + 94823 0.71 0.896453
Target:  5'- aCCGGCGggugCUGCggcuggaCCGcUGUGCCUGUCa -3'
miRNA:   3'- -GGCUGCaa--GAUG-------GGCuACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 86898 0.71 0.897091
Target:  5'- cCCGGCGgggccgCcgACCCGGUGacGCCCGUg -3'
miRNA:   3'- -GGCUGCaa----Ga-UGGGCUACa-UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 100244 0.71 0.897091
Target:  5'- gUCGGCG-UCaGCCCGcUG-ACCCGCUu -3'
miRNA:   3'- -GGCUGCaAGaUGGGCuACaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 188382 0.71 0.90334
Target:  5'- -gGGCGUUCU-CCCGGgcuuCUCGCCg -3'
miRNA:   3'- ggCUGCAAGAuGGGCUacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 49112 0.7 0.909366
Target:  5'- cUCGGCGUcCUGCaCCGGg--ACCgGCCg -3'
miRNA:   3'- -GGCUGCAaGAUG-GGCUacaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 19891 0.7 0.915168
Target:  5'- gCCGACcg-CUGCCgCGAgcacgaccUG-ACCCGCCu -3'
miRNA:   3'- -GGCUGcaaGAUGG-GCU--------ACaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 50715 0.7 0.920742
Target:  5'- gCCGccucGCGUUCgccGCCCGggGcGgCCGCCu -3'
miRNA:   3'- -GGC----UGCAAGa--UGGGCuaCaUgGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 136995 0.7 0.923978
Target:  5'- gCGAUGUUCUccgcggacaggaGCCCGGggaucagguucagGUGCUCGUCg -3'
miRNA:   3'- gGCUGCAAGA------------UGGGCUa------------CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 108440 0.7 0.926089
Target:  5'- aCCGGCGgc--ACUCGcgGcggcgGCCCGCCg -3'
miRNA:   3'- -GGCUGCaagaUGGGCuaCa----UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 122663 0.7 0.926089
Target:  5'- gCUGGCGgcgcagGCCCGGcUGUGCCgGUCg -3'
miRNA:   3'- -GGCUGCaaga--UGGGCU-ACAUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 8142 0.7 0.930706
Target:  5'- aCCGGCGacggcaccgcUUCUccuucucccccggGCCCGgcGU-CCCGCCc -3'
miRNA:   3'- -GGCUGC----------AAGA-------------UGGGCuaCAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 632 0.7 0.931208
Target:  5'- gUGGCGUUCgccuCCCGuc---CCCGCCg -3'
miRNA:   3'- gGCUGCAAGau--GGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 120206 0.7 0.931208
Target:  5'- aCGAgCGgggUCgcgccGCCCG-UGUACCaCGCCg -3'
miRNA:   3'- gGCU-GCa--AGa----UGGGCuACAUGG-GCGG- -5'
10738 5' -53.5 NC_002794.1 + 187560 0.69 0.936098
Target:  5'- gCCGcCGUcggGCCCG---UACCCGCCg -3'
miRNA:   3'- -GGCuGCAagaUGGGCuacAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 36351 0.69 0.940762
Target:  5'- cCCGGCGUgcgCggccACCgGGUGcgcGCCCGCg -3'
miRNA:   3'- -GGCUGCAa--Ga---UGGgCUACa--UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 51685 0.69 0.940762
Target:  5'- cCCGACGccaccgcCUGCCCG-UGcUACCgGCUg -3'
miRNA:   3'- -GGCUGCaa-----GAUGGGCuAC-AUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 189865 0.69 0.945199
Target:  5'- gUCGGCGUcgUCgccgccgaccgGCCCGcucggGCCCGCCg -3'
miRNA:   3'- -GGCUGCA--AGa----------UGGGCuaca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 183161 0.69 0.953016
Target:  5'- gCGGcCGggCUGCCCGAgccgGUcggggaccgagacGCgCCGCCa -3'
miRNA:   3'- gGCU-GCaaGAUGGGCUa---CA-------------UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 113429 0.69 0.953406
Target:  5'- gUCGGCGUUCUGCCgCGccGU-CUCGgCg -3'
miRNA:   3'- -GGCUGCAAGAUGG-GCuaCAuGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.