miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 34054 0.69 0.953406
Target:  5'- gCCGGCccgCgcacgACCCGccGUuCCCGCCg -3'
miRNA:   3'- -GGCUGcaaGa----UGGGCuaCAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 113429 0.69 0.953406
Target:  5'- gUCGGCGUUCUGCCgCGccGU-CUCGgCg -3'
miRNA:   3'- -GGCUGCAAGAUGG-GCuaCAuGGGCgG- -5'
10738 5' -53.5 NC_002794.1 + 20165 0.69 0.953406
Target:  5'- cCUGGCGgccccaUACCgCGAga-GCCCGCCg -3'
miRNA:   3'- -GGCUGCaag---AUGG-GCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 23728 0.68 0.957181
Target:  5'- gCGGCGg---GCCCGAcGUACCUuCCg -3'
miRNA:   3'- gGCUGCaagaUGGGCUaCAUGGGcGG- -5'
10738 5' -53.5 NC_002794.1 + 68318 0.68 0.957181
Target:  5'- gCCGacGCGUUCcgcgGCCUGGUGaccggguucAUCCGCCa -3'
miRNA:   3'- -GGC--UGCAAGa---UGGGCUACa--------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 88665 0.68 0.957181
Target:  5'- aCCGGacCGUUCUGCCUauac-GCCCGUCg -3'
miRNA:   3'- -GGCU--GCAAGAUGGGcuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 106578 0.68 0.957181
Target:  5'- aCgGACGUggUgUACUCGGUcgaGUACCUGCUg -3'
miRNA:   3'- -GgCUGCA--AgAUGGGCUA---CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 63322 0.68 0.957181
Target:  5'- uCCGGCGggggGCCCGAgcgcggaccgGUcGCUCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCUa---------CA-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 32203 0.68 0.957181
Target:  5'- aUGGCGUUCgacgauguCCCgGAUG-ACCgGCCa -3'
miRNA:   3'- gGCUGCAAGau------GGG-CUACaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 113287 0.68 0.959695
Target:  5'- cCCG-CG-UCUGCUCGgcGcagcgcucguccgcUACCCGCCg -3'
miRNA:   3'- -GGCuGCaAGAUGGGCuaC--------------AUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80052 0.68 0.960741
Target:  5'- gCCGGCGcg--AgCCGcgGUacuugGCCCGCCa -3'
miRNA:   3'- -GGCUGCaagaUgGGCuaCA-----UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 35667 0.68 0.960741
Target:  5'- uCCGACGUggucaacgaggUC-AUCCGGgaagaGUGCCCgGCCu -3'
miRNA:   3'- -GGCUGCA-----------AGaUGGGCUa----CAUGGG-CGG- -5'
10738 5' -53.5 NC_002794.1 + 101451 0.68 0.962776
Target:  5'- gCCGGCGcgCccGCCCGAaacgccggcgcGCCCGCCc -3'
miRNA:   3'- -GGCUGCaaGa-UGGGCUaca--------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 18553 0.68 0.964091
Target:  5'- aCGGCGgcg-ACCgCGAccGUGCCCGCg -3'
miRNA:   3'- gGCUGCaagaUGG-GCUa-CAUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 25525 0.68 0.967236
Target:  5'- gCUGACGga--GCCuCGAUGaGCCgGCCa -3'
miRNA:   3'- -GGCUGCaagaUGG-GCUACaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 20548 0.68 0.967236
Target:  5'- aCGACGggCgACCgGAU---CCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGGgCUAcauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 73775 0.68 0.967236
Target:  5'- aCUGGCGcUCcagguCCUGcUGUACCCGUCc -3'
miRNA:   3'- -GGCUGCaAGau---GGGCuACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 11645 0.68 0.967236
Target:  5'- gCGACGggCgGCCgaCGAcGcgGCCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGG--GCUaCa-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 31391 0.68 0.969027
Target:  5'- gUCGGCGgccccgccgcGCCCGccGcGCCCGCCg -3'
miRNA:   3'- -GGCUGCaaga------UGGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 60645 0.68 0.970181
Target:  5'- gCCGGCGgcgccggCcACCCGgcGcGCgCCGCCg -3'
miRNA:   3'- -GGCUGCaa-----GaUGGGCuaCaUG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.