miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 183207 0.66 0.988871
Target:  5'- gCCGGCGgcgcguucgUCgccagcgaccaggcgACCCGAcacgcgGcgGCCCGCCa -3'
miRNA:   3'- -GGCUGCa--------AGa--------------UGGGCUa-----Ca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 24038 0.66 0.988735
Target:  5'- aCGGCGguccCUcCCCGucc-GCCCGCCc -3'
miRNA:   3'- gGCUGCaa--GAuGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 152845 0.66 0.988735
Target:  5'- gCGACGc-CUACgCGcUGUACCUgGCCu -3'
miRNA:   3'- gGCUGCaaGAUGgGCuACAUGGG-CGG- -5'
10738 5' -53.5 NC_002794.1 + 81257 0.66 0.988735
Target:  5'- aCGACGcgCUGgCCuuc--GCCCGCCa -3'
miRNA:   3'- gGCUGCaaGAUgGGcuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 18589 0.66 0.988457
Target:  5'- aCGACGgaacacaacacgUCUACCuCGAcgGcACCgGCCg -3'
miRNA:   3'- gGCUGCa-----------AGAUGG-GCUa-CaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 186894 0.66 0.988317
Target:  5'- uCCGGCGUccgcaggaccagguUCcgGCCCcaguaGUGCgCCGCCa -3'
miRNA:   3'- -GGCUGCA--------------AGa-UGGGcua--CAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 106833 0.66 0.987295
Target:  5'- uCCGGCGcUCgGCCUGcgGc-UCCGCCu -3'
miRNA:   3'- -GGCUGCaAGaUGGGCuaCauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 41926 0.66 0.987295
Target:  5'- cUCGugGgcCaGCCCGAaGUGCaCGCCc -3'
miRNA:   3'- -GGCugCaaGaUGGGCUaCAUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 67053 0.66 0.987295
Target:  5'- cCCGGCGUccgugggcuccUCgcugGCCuUGAUGUACgUGUCg -3'
miRNA:   3'- -GGCUGCA-----------AGa---UGG-GCUACAUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 137876 0.66 0.987295
Target:  5'- gCGGCG-UCUGgUgGgcGaUGCCCGCCa -3'
miRNA:   3'- gGCUGCaAGAUgGgCuaC-AUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 137112 0.66 0.987295
Target:  5'- uCCG-CGacCUcccGCCCGAacUGUcguccguccGCCCGCCc -3'
miRNA:   3'- -GGCuGCaaGA---UGGGCU--ACA---------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 143660 0.66 0.987295
Target:  5'- -gGACGgca-GCCCGuUGUACCgCGUCa -3'
miRNA:   3'- ggCUGCaagaUGGGCuACAUGG-GCGG- -5'
10738 5' -53.5 NC_002794.1 + 194842 0.66 0.986836
Target:  5'- cCCGGCGUcuccagccgcaccgUCUGCCCGc---GCCgCGCg -3'
miRNA:   3'- -GGCUGCA--------------AGAUGGGCuacaUGG-GCGg -5'
10738 5' -53.5 NC_002794.1 + 184194 0.66 0.985717
Target:  5'- cCCGGCGag--GCCCGcu---CCCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 190162 0.66 0.985717
Target:  5'- gCGGCGgcUCUcCUCGAac-ACCCGCCg -3'
miRNA:   3'- gGCUGCa-AGAuGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 100885 0.66 0.985717
Target:  5'- aCCGuCGUccuggaccUCUACCCGGUcUGCaUgGCCa -3'
miRNA:   3'- -GGCuGCA--------AGAUGGGCUAcAUG-GgCGG- -5'
10738 5' -53.5 NC_002794.1 + 56574 0.66 0.985717
Target:  5'- gCCGACcgcCcGCgCCGcgGcGCCCGCCg -3'
miRNA:   3'- -GGCUGcaaGaUG-GGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57867 0.67 0.984701
Target:  5'- aCCGACGcggcgcugcacagCUGCCCGuc--GCCUGCUa -3'
miRNA:   3'- -GGCUGCaa-----------GAUGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 109749 0.67 0.983994
Target:  5'- cCCgGACGUUCaGCCCGucgGUucACaCGCCc -3'
miRNA:   3'- -GG-CUGCAAGaUGGGCua-CA--UGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 59318 0.67 0.983994
Target:  5'- aCGGCGc---GCCCGAcuucgccGCCCGCCa -3'
miRNA:   3'- gGCUGCaagaUGGGCUaca----UGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.