miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 59318 0.67 0.983994
Target:  5'- aCGGCGc---GCCCGAcuucgccGCCCGCCa -3'
miRNA:   3'- gGCUGCaagaUGGGCUaca----UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 109749 0.67 0.983994
Target:  5'- cCCgGACGUUCaGCCCGucgGUucACaCGCCc -3'
miRNA:   3'- -GG-CUGCAAGaUGGGCua-CA--UGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 125649 0.67 0.983994
Target:  5'- gCGGCGUUCUGCCUcg---GCgCGCUg -3'
miRNA:   3'- gGCUGCAAGAUGGGcuacaUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 77296 0.67 0.983262
Target:  5'- uCCGGCug-CUGCCCGAccgccacgaacGCCUGCCc -3'
miRNA:   3'- -GGCUGcaaGAUGGGCUaca--------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 190461 0.67 0.982117
Target:  5'- gCGGCGUcgcGCCCGAcgcccacggGUGCCCcacGCCg -3'
miRNA:   3'- gGCUGCAagaUGGGCUa--------CAUGGG---CGG- -5'
10738 5' -53.5 NC_002794.1 + 91578 0.67 0.982117
Target:  5'- gCUGAUGaaCUACuCCGA-GUGgCCGCUg -3'
miRNA:   3'- -GGCUGCaaGAUG-GGCUaCAUgGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 143721 0.67 0.982117
Target:  5'- cCCGGCGggcgUCguccucGCCCGccGgacGCgCCGCCg -3'
miRNA:   3'- -GGCUGCa---AGa-----UGGGCuaCa--UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 138924 0.67 0.982117
Target:  5'- gCGGCGgauggUCUG-CCGGUGcGCCC-CCa -3'
miRNA:   3'- gGCUGCa----AGAUgGGCUACaUGGGcGG- -5'
10738 5' -53.5 NC_002794.1 + 158729 0.67 0.98008
Target:  5'- -aGAUGUUCgaagacgGCCCGGguagUGUGCgCGCa -3'
miRNA:   3'- ggCUGCAAGa------UGGGCU----ACAUGgGCGg -5'
10738 5' -53.5 NC_002794.1 + 36114 0.67 0.98008
Target:  5'- gCCGAUGagau-CCCGGaucGCCCGCCg -3'
miRNA:   3'- -GGCUGCaagauGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 149984 0.67 0.98008
Target:  5'- aCCGGCGgccgcuaUCUGCCgCGcUGcuacgacgGCCCGCUc -3'
miRNA:   3'- -GGCUGCa------AGAUGG-GCuACa-------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57420 0.67 0.98008
Target:  5'- gCCGGCGUgCUGgUCGGcacgGcGCCCGUCa -3'
miRNA:   3'- -GGCUGCAaGAUgGGCUa---CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 90083 0.67 0.977874
Target:  5'- gCCGAUGUggcucggcacgcUCUGCgCCGcgGUGggCGCCg -3'
miRNA:   3'- -GGCUGCA------------AGAUG-GGCuaCAUggGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80898 0.67 0.977874
Target:  5'- cCCGGCGgcccUCgacgACCCGc---GCCCGCUc -3'
miRNA:   3'- -GGCUGCa---AGa---UGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 12797 0.67 0.977874
Target:  5'- gUGACGaUCgGCCCGGg--GCCCGUg -3'
miRNA:   3'- gGCUGCaAGaUGGGCUacaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 28730 0.67 0.977874
Target:  5'- uCCGAcCGUguc-CCCGAg--GCCCGUCg -3'
miRNA:   3'- -GGCU-GCAagauGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 155914 0.67 0.977874
Target:  5'- cUCGACGUgcggAgCCGG-GUGCuuGCCg -3'
miRNA:   3'- -GGCUGCAaga-UgGGCUaCAUGggCGG- -5'
10738 5' -53.5 NC_002794.1 + 37028 0.67 0.977874
Target:  5'- cCCGAUGUag-ACCUucagGGUGUccuGCCCGUCg -3'
miRNA:   3'- -GGCUGCAagaUGGG----CUACA---UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 63008 0.67 0.975494
Target:  5'- cCCGcACGUg--GCUgGAgcugGUGCUCGCCu -3'
miRNA:   3'- -GGC-UGCAagaUGGgCUa---CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80541 0.67 0.975494
Target:  5'- aCCGGCGccUCUucCCCGcgG-ACCCGUUc -3'
miRNA:   3'- -GGCUGCa-AGAu-GGGCuaCaUGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.