miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 80541 0.67 0.975494
Target:  5'- aCCGGCGccUCUucCCCGcgG-ACCCGUUc -3'
miRNA:   3'- -GGCUGCa-AGAu-GGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 69825 0.67 0.975494
Target:  5'- aCCGGCG-UCcGCCCGGuccgcUGgcucaCCGCCu -3'
miRNA:   3'- -GGCUGCaAGaUGGGCU-----ACaug--GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 90680 0.67 0.975494
Target:  5'- gCCG-CGUggCUGuuCG-UGUGCCCGCg -3'
miRNA:   3'- -GGCuGCAa-GAUggGCuACAUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 38386 0.68 0.973979
Target:  5'- gCCGACGUgacacaccgucccggUC-ACCCGgcGagcGCUCGCCg -3'
miRNA:   3'- -GGCUGCA---------------AGaUGGGCuaCa--UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 144080 0.68 0.972932
Target:  5'- uCCGACGaggugGCCUGGcUGU-CCCGCUu -3'
miRNA:   3'- -GGCUGCaaga-UGGGCU-ACAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 105986 0.68 0.972932
Target:  5'- uCCGgucGCGUUCgAgCCGAUGcUGcCCCGCg -3'
miRNA:   3'- -GGC---UGCAAGaUgGGCUAC-AU-GGGCGg -5'
10738 5' -53.5 NC_002794.1 + 109693 0.68 0.972932
Target:  5'- gCCGACcccggUCaGCCCGccc-GCCCGCCc -3'
miRNA:   3'- -GGCUGca---AGaUGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 76546 0.68 0.972932
Target:  5'- gCCGACGcggUCgcgcGCCgGGUacucacccgGCCCGCCg -3'
miRNA:   3'- -GGCUGCa--AGa---UGGgCUAca-------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57944 0.68 0.972932
Target:  5'- gCCGACGcgCUgcgcaGCCUG-UGccACCCGCUg -3'
miRNA:   3'- -GGCUGCaaGA-----UGGGCuACa-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 60645 0.68 0.970181
Target:  5'- gCCGGCGgcgccggCcACCCGgcGcGCgCCGCCg -3'
miRNA:   3'- -GGCUGCaa-----GaUGGGCuaCaUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 140429 0.68 0.970181
Target:  5'- gCGACGUaCaACCgGAUGUugCUGUg -3'
miRNA:   3'- gGCUGCAaGaUGGgCUACAugGGCGg -5'
10738 5' -53.5 NC_002794.1 + 121764 0.68 0.970181
Target:  5'- aUGGCGg--UGCCCGAg--GCgCCGCCg -3'
miRNA:   3'- gGCUGCaagAUGGGCUacaUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 70830 0.68 0.970181
Target:  5'- cUCGAaGUUCUucacgcgaucCCCGAcGUGCCgGCCu -3'
miRNA:   3'- -GGCUgCAAGAu---------GGGCUaCAUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 31391 0.68 0.969027
Target:  5'- gUCGGCGgccccgccgcGCCCGccGcGCCCGCCg -3'
miRNA:   3'- -GGCUGCaaga------UGGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 25525 0.68 0.967236
Target:  5'- gCUGACGga--GCCuCGAUGaGCCgGCCa -3'
miRNA:   3'- -GGCUGCaagaUGG-GCUACaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 20548 0.68 0.967236
Target:  5'- aCGACGggCgACCgGAU---CCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGGgCUAcauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 11645 0.68 0.967236
Target:  5'- gCGACGggCgGCCgaCGAcGcgGCCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGG--GCUaCa-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 73775 0.68 0.967236
Target:  5'- aCUGGCGcUCcagguCCUGcUGUACCCGUCc -3'
miRNA:   3'- -GGCUGCaAGau---GGGCuACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 18553 0.68 0.964091
Target:  5'- aCGGCGgcg-ACCgCGAccGUGCCCGCg -3'
miRNA:   3'- gGCUGCaagaUGG-GCUa-CAUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 101451 0.68 0.962776
Target:  5'- gCCGGCGcgCccGCCCGAaacgccggcgcGCCCGCCc -3'
miRNA:   3'- -GGCUGCaaGa-UGGGCUaca--------UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.