miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 632 0.7 0.931208
Target:  5'- gUGGCGUUCgccuCCCGuc---CCCGCCg -3'
miRNA:   3'- gGCUGCAAGau--GGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 8142 0.7 0.930706
Target:  5'- aCCGGCGacggcaccgcUUCUccuucucccccggGCCCGgcGU-CCCGCCc -3'
miRNA:   3'- -GGCUGC----------AAGA-------------UGGGCuaCAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 10354 0.66 0.991232
Target:  5'- gUGACGgaCUGCUCGAcgGUggAUCCGCa -3'
miRNA:   3'- gGCUGCaaGAUGGGCUa-CA--UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 11645 0.68 0.967236
Target:  5'- gCGACGggCgGCCgaCGAcGcgGCCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGG--GCUaCa-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 11987 0.73 0.797512
Target:  5'- uCCGGCGgcugguugCUGCuguguggaCUGAUGUGCgCCGCCg -3'
miRNA:   3'- -GGCUGCaa------GAUG--------GGCUACAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 12371 0.66 0.991232
Target:  5'- cUCGGCGUgCUcGCCUGccGcGCUCGCCu -3'
miRNA:   3'- -GGCUGCAaGA-UGGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 12797 0.67 0.977874
Target:  5'- gUGACGaUCgGCCCGGg--GCCCGUg -3'
miRNA:   3'- gGCUGCaAGaUGGGCUacaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 14933 0.75 0.723344
Target:  5'- cCCGACGUgCU-CUCGAUcGgcucGCCCGCCg -3'
miRNA:   3'- -GGCUGCAaGAuGGGCUA-Ca---UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 16461 0.67 0.983994
Target:  5'- uCCGAcuCGUccggCUGCCCa----GCCCGCCg -3'
miRNA:   3'- -GGCU--GCAa---GAUGGGcuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 18553 0.68 0.964091
Target:  5'- aCGGCGgcg-ACCgCGAccGUGCCCGCg -3'
miRNA:   3'- gGCUGCaagaUGG-GCUa-CAUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 18589 0.66 0.988457
Target:  5'- aCGACGgaacacaacacgUCUACCuCGAcgGcACCgGCCg -3'
miRNA:   3'- gGCUGCa-----------AGAUGG-GCUa-CaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 19472 0.66 0.991232
Target:  5'- gCGGCGgg--ACCCGccgGUcGCCCGCa -3'
miRNA:   3'- gGCUGCaagaUGGGCua-CA-UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 19891 0.7 0.915168
Target:  5'- gCCGACcg-CUGCCgCGAgcacgaccUG-ACCCGCCu -3'
miRNA:   3'- -GGCUGcaaGAUGG-GCU--------ACaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 20165 0.69 0.953406
Target:  5'- cCUGGCGgccccaUACCgCGAga-GCCCGCCg -3'
miRNA:   3'- -GGCUGCaag---AUGG-GCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 20548 0.68 0.967236
Target:  5'- aCGACGggCgACCgGAU---CCCGCCg -3'
miRNA:   3'- gGCUGCaaGaUGGgCUAcauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 23553 0.67 0.983994
Target:  5'- gCGACucggUCcccccagGCCCGGUGccgccgccACCCGCCg -3'
miRNA:   3'- gGCUGca--AGa------UGGGCUACa-------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 23728 0.68 0.957181
Target:  5'- gCGGCGg---GCCCGAcGUACCUuCCg -3'
miRNA:   3'- gGCUGCaagaUGGGCUaCAUGGGcGG- -5'
10738 5' -53.5 NC_002794.1 + 24038 0.66 0.988735
Target:  5'- aCGGCGguccCUcCCCGucc-GCCCGCCc -3'
miRNA:   3'- gGCUGCaa--GAuGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 25525 0.68 0.967236
Target:  5'- gCUGACGga--GCCuCGAUGaGCCgGCCa -3'
miRNA:   3'- -GGCUGCaagaUGG-GCUACaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 28730 0.67 0.977874
Target:  5'- uCCGAcCGUguc-CCCGAg--GCCCGUCg -3'
miRNA:   3'- -GGCU-GCAagauGGGCUacaUGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.