miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 31391 0.68 0.969027
Target:  5'- gUCGGCGgccccgccgcGCCCGccGcGCCCGCCg -3'
miRNA:   3'- -GGCUGCaaga------UGGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 32203 0.68 0.957181
Target:  5'- aUGGCGUUCgacgauguCCCgGAUG-ACCgGCCa -3'
miRNA:   3'- gGCUGCAAGau------GGG-CUACaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 32501 0.73 0.797512
Target:  5'- cUCGACG-UCUugCCGGcu--CCCGCCg -3'
miRNA:   3'- -GGCUGCaAGAugGGCUacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 34054 0.69 0.953406
Target:  5'- gCCGGCccgCgcacgACCCGccGUuCCCGCCg -3'
miRNA:   3'- -GGCUGcaaGa----UGGGCuaCAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 35667 0.68 0.960741
Target:  5'- uCCGACGUggucaacgaggUC-AUCCGGgaagaGUGCCCgGCCu -3'
miRNA:   3'- -GGCUGCA-----------AGaUGGGCUa----CAUGGG-CGG- -5'
10738 5' -53.5 NC_002794.1 + 36114 0.67 0.98008
Target:  5'- gCCGAUGagau-CCCGGaucGCCCGCCg -3'
miRNA:   3'- -GGCUGCaagauGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 36351 0.69 0.940762
Target:  5'- cCCGGCGUgcgCggccACCgGGUGcgcGCCCGCg -3'
miRNA:   3'- -GGCUGCAa--Ga---UGGgCUACa--UGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 37028 0.67 0.977874
Target:  5'- cCCGAUGUag-ACCUucagGGUGUccuGCCCGUCg -3'
miRNA:   3'- -GGCUGCAagaUGGG----CUACA---UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 38386 0.68 0.973979
Target:  5'- gCCGACGUgacacaccgucccggUC-ACCCGgcGagcGCUCGCCg -3'
miRNA:   3'- -GGCUGCA---------------AGaUGGGCuaCa--UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 41926 0.66 0.987295
Target:  5'- cUCGugGgcCaGCCCGAaGUGCaCGCCc -3'
miRNA:   3'- -GGCugCaaGaUGGGCUaCAUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 49112 0.7 0.909366
Target:  5'- cUCGGCGUcCUGCaCCGGg--ACCgGCCg -3'
miRNA:   3'- -GGCUGCAaGAUG-GGCUacaUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 50333 0.66 0.990044
Target:  5'- gUCGAUGUUggGCUCGGUcaccgGCuCCGCCa -3'
miRNA:   3'- -GGCUGCAAgaUGGGCUAca---UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 50715 0.7 0.920742
Target:  5'- gCCGccucGCGUUCgccGCCCGggGcGgCCGCCu -3'
miRNA:   3'- -GGC----UGCAAGa--UGGGCuaCaUgGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 51190 0.72 0.839514
Target:  5'- gCCGAuCGUUCUcguucgcucGCCCGcgGagcgGCCgGCCg -3'
miRNA:   3'- -GGCU-GCAAGA---------UGGGCuaCa---UGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 51685 0.69 0.940762
Target:  5'- cCCGACGccaccgcCUGCCCG-UGcUACCgGCUg -3'
miRNA:   3'- -GGCUGCaa-----GAUGGGCuAC-AUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 52600 0.8 0.433669
Target:  5'- gCCGACG-UCcGCCCGAgacGCCCGCCc -3'
miRNA:   3'- -GGCUGCaAGaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 56574 0.66 0.985717
Target:  5'- gCCGACcgcCcGCgCCGcgGcGCCCGCCg -3'
miRNA:   3'- -GGCUGcaaGaUG-GGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57420 0.67 0.98008
Target:  5'- gCCGGCGUgCUGgUCGGcacgGcGCCCGUCa -3'
miRNA:   3'- -GGCUGCAaGAUgGGCUa---CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57867 0.67 0.984701
Target:  5'- aCCGACGcggcgcugcacagCUGCCCGuc--GCCUGCUa -3'
miRNA:   3'- -GGCUGCaa-----------GAUGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 57944 0.68 0.972932
Target:  5'- gCCGACGcgCUgcgcaGCCUG-UGccACCCGCUg -3'
miRNA:   3'- -GGCUGCaaGA-----UGGGCuACa-UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.