miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 58803 0.71 0.881887
Target:  5'- aCCGGCGccUCUACCCGcccuuccucaaccGCCUGCCg -3'
miRNA:   3'- -GGCUGCa-AGAUGGGCuaca---------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 59318 0.67 0.983994
Target:  5'- aCGGCGc---GCCCGAcuucgccGCCCGCCa -3'
miRNA:   3'- gGCUGCaagaUGGGCUaca----UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 60645 0.68 0.970181
Target:  5'- gCCGGCGgcgccggCcACCCGgcGcGCgCCGCCg -3'
miRNA:   3'- -GGCUGCaa-----GaUGGGCuaCaUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 62546 0.66 0.991232
Target:  5'- cCCGACGccc-AUCCGG---ACCCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 63008 0.67 0.975494
Target:  5'- cCCGcACGUg--GCUgGAgcugGUGCUCGCCu -3'
miRNA:   3'- -GGC-UGCAagaUGGgCUa---CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 63322 0.68 0.957181
Target:  5'- uCCGGCGggggGCCCGAgcgcggaccgGUcGCUCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCUa---------CA-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 67053 0.66 0.987295
Target:  5'- cCCGGCGUccgugggcuccUCgcugGCCuUGAUGUACgUGUCg -3'
miRNA:   3'- -GGCUGCA-----------AGa---UGG-GCUACAUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 68318 0.68 0.957181
Target:  5'- gCCGacGCGUUCcgcgGCCUGGUGaccggguucAUCCGCCa -3'
miRNA:   3'- -GGC--UGCAAGa---UGGGCUACa--------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 69825 0.67 0.975494
Target:  5'- aCCGGCG-UCcGCCCGGuccgcUGgcucaCCGCCu -3'
miRNA:   3'- -GGCUGCaAGaUGGGCU-----ACaug--GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 70830 0.68 0.970181
Target:  5'- cUCGAaGUUCUucacgcgaucCCCGAcGUGCCgGCCu -3'
miRNA:   3'- -GGCUgCAAGAu---------GGGCUaCAUGGgCGG- -5'
10738 5' -53.5 NC_002794.1 + 73775 0.68 0.967236
Target:  5'- aCUGGCGcUCcagguCCUGcUGUACCCGUCc -3'
miRNA:   3'- -GGCUGCaAGau---GGGCuACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 75831 0.75 0.684189
Target:  5'- aCGACGUaCaACCCGAUGUGuacaaccuCCCGCg -3'
miRNA:   3'- gGCUGCAaGaUGGGCUACAU--------GGGCGg -5'
10738 5' -53.5 NC_002794.1 + 76546 0.68 0.972932
Target:  5'- gCCGACGcggUCgcgcGCCgGGUacucacccgGCCCGCCg -3'
miRNA:   3'- -GGCUGCa--AGa---UGGgCUAca-------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 77296 0.67 0.983262
Target:  5'- uCCGGCug-CUGCCCGAccgccacgaacGCCUGCCc -3'
miRNA:   3'- -GGCUGcaaGAUGGGCUaca--------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 77909 0.73 0.814795
Target:  5'- cCCGGCcccGUUCgACCCGGUccgccgaaACCCGCCg -3'
miRNA:   3'- -GGCUG---CAAGaUGGGCUAca------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80052 0.68 0.960741
Target:  5'- gCCGGCGcg--AgCCGcgGUacuugGCCCGCCa -3'
miRNA:   3'- -GGCUGCaagaUgGGCuaCA-----UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80441 0.71 0.869927
Target:  5'- gCCGGCGgcCgccgGCCCGucgGcgGCCCGCUg -3'
miRNA:   3'- -GGCUGCaaGa---UGGGCua-Ca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80541 0.67 0.975494
Target:  5'- aCCGGCGccUCUucCCCGcgG-ACCCGUUc -3'
miRNA:   3'- -GGCUGCa-AGAu-GGGCuaCaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 80898 0.67 0.977874
Target:  5'- cCCGGCGgcccUCgacgACCCGc---GCCCGCUc -3'
miRNA:   3'- -GGCUGCa---AGa---UGGGCuacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 81257 0.66 0.988735
Target:  5'- aCGACGcgCUGgCCuuc--GCCCGCCa -3'
miRNA:   3'- gGCUGCaaGAUgGGcuacaUGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.