miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 195461 0.74 0.77966
Target:  5'- aCCGACGccccgcUUGCCCGGacucGCCCGCCg -3'
miRNA:   3'- -GGCUGCaa----GAUGGGCUaca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 194842 0.66 0.986836
Target:  5'- cCCGGCGUcuccagccgcaccgUCUGCCCGc---GCCgCGCg -3'
miRNA:   3'- -GGCUGCA--------------AGAUGGGCuacaUGG-GCGg -5'
10738 5' -53.5 NC_002794.1 + 191523 0.66 0.991232
Target:  5'- gCCGGgCGUcg-GCCCGcgccuCCCGCCg -3'
miRNA:   3'- -GGCU-GCAagaUGGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 191182 0.66 0.991232
Target:  5'- aUCGuCGcgCUcGCCCGGcc-GCCCGCCc -3'
miRNA:   3'- -GGCuGCaaGA-UGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 190461 0.67 0.982117
Target:  5'- gCGGCGUcgcGCCCGAcgcccacggGUGCCCcacGCCg -3'
miRNA:   3'- gGCUGCAagaUGGGCUa--------CAUGGG---CGG- -5'
10738 5' -53.5 NC_002794.1 + 190162 0.66 0.985717
Target:  5'- gCGGCGgcUCUcCUCGAac-ACCCGCCg -3'
miRNA:   3'- gGCUGCa-AGAuGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 189865 0.69 0.945199
Target:  5'- gUCGGCGUcgUCgccgccgaccgGCCCGcucggGCCCGCCg -3'
miRNA:   3'- -GGCUGCA--AGa----------UGGGCuaca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 189747 0.72 0.847403
Target:  5'- uCCGGCaGUUCggcACUCGGUuucgGUGCaCCGCCa -3'
miRNA:   3'- -GGCUG-CAAGa--UGGGCUA----CAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 189589 0.75 0.721411
Target:  5'- gCCGGCGccccuuagcccgUCcGCCCGAg--ACCCGCCg -3'
miRNA:   3'- -GGCUGCa-----------AGaUGGGCUacaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 188382 0.71 0.90334
Target:  5'- -gGGCGUUCU-CCCGGgcuuCUCGCCg -3'
miRNA:   3'- ggCUGCAAGAuGGGCUacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 187560 0.69 0.936098
Target:  5'- gCCGcCGUcggGCCCG---UACCCGCCg -3'
miRNA:   3'- -GGCuGCAagaUGGGCuacAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 186894 0.66 0.988317
Target:  5'- uCCGGCGUccgcaggaccagguUCcgGCCCcaguaGUGCgCCGCCa -3'
miRNA:   3'- -GGCUGCA--------------AGa-UGGGcua--CAUG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 186353 0.66 0.991232
Target:  5'- gCGACGU---GCCCGAcc-AgCCGCCg -3'
miRNA:   3'- gGCUGCAagaUGGGCUacaUgGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 186051 0.66 0.991232
Target:  5'- gCCGuCGUUC--CCCGGUccGUGgccaCCGCCg -3'
miRNA:   3'- -GGCuGCAAGauGGGCUA--CAUg---GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 184194 0.66 0.985717
Target:  5'- cCCGGCGag--GCCCGcu---CCCGCCc -3'
miRNA:   3'- -GGCUGCaagaUGGGCuacauGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 183207 0.66 0.988871
Target:  5'- gCCGGCGgcgcguucgUCgccagcgaccaggcgACCCGAcacgcgGcgGCCCGCCa -3'
miRNA:   3'- -GGCUGCa--------AGa--------------UGGGCUa-----Ca-UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 183161 0.69 0.953016
Target:  5'- gCGGcCGggCUGCCCGAgccgGUcggggaccgagacGCgCCGCCa -3'
miRNA:   3'- gGCU-GCaaGAUGGGCUa---CA-------------UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 182994 0.65 0.992099
Target:  5'- gCCGGCGcUUCgccgcgggcgcCCCGcgcGcGCCCGCCg -3'
miRNA:   3'- -GGCUGC-AAGau---------GGGCua-CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 158729 0.67 0.98008
Target:  5'- -aGAUGUUCgaagacgGCCCGGguagUGUGCgCGCa -3'
miRNA:   3'- ggCUGCAAGa------UGGGCU----ACAUGgGCGg -5'
10738 5' -53.5 NC_002794.1 + 155914 0.67 0.977874
Target:  5'- cUCGACGUgcggAgCCGG-GUGCuuGCCg -3'
miRNA:   3'- -GGCUGCAaga-UgGGCUaCAUGggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.