miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 5' -53.5 NC_002794.1 + 152845 0.66 0.988735
Target:  5'- gCGACGc-CUACgCGcUGUACCUgGCCu -3'
miRNA:   3'- gGCUGCaaGAUGgGCuACAUGGG-CGG- -5'
10738 5' -53.5 NC_002794.1 + 150993 0.65 0.991889
Target:  5'- aCGACGagCUcGCCCGcuucaacuucgaGUGCUCGCCc -3'
miRNA:   3'- gGCUGCaaGA-UGGGCua----------CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 149984 0.67 0.98008
Target:  5'- aCCGGCGgccgcuaUCUGCCgCGcUGcuacgacgGCCCGCUc -3'
miRNA:   3'- -GGCUGCa------AGAUGG-GCuACa-------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 145332 0.66 0.991232
Target:  5'- gCGGCGcUCggGCCCGAgcggGCCCGa- -3'
miRNA:   3'- gGCUGCaAGa-UGGGCUaca-UGGGCgg -5'
10738 5' -53.5 NC_002794.1 + 144472 1.15 0.003619
Target:  5'- cCCGACGUUCUACCCGAUGUACCCGCCg -3'
miRNA:   3'- -GGCUGCAAGAUGGGCUACAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 144080 0.68 0.972932
Target:  5'- uCCGACGaggugGCCUGGcUGU-CCCGCUu -3'
miRNA:   3'- -GGCUGCaaga-UGGGCU-ACAuGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 143721 0.67 0.982117
Target:  5'- cCCGGCGggcgUCguccucGCCCGccGgacGCgCCGCCg -3'
miRNA:   3'- -GGCUGCa---AGa-----UGGGCuaCa--UG-GGCGG- -5'
10738 5' -53.5 NC_002794.1 + 143660 0.66 0.987295
Target:  5'- -gGACGgca-GCCCGuUGUACCgCGUCa -3'
miRNA:   3'- ggCUGCaagaUGGGCuACAUGG-GCGG- -5'
10738 5' -53.5 NC_002794.1 + 141716 0.73 0.788653
Target:  5'- aCCGGCGUUCgccgAUCCGAUGcaaCCGUa -3'
miRNA:   3'- -GGCUGCAAGa---UGGGCUACaugGGCGg -5'
10738 5' -53.5 NC_002794.1 + 140429 0.68 0.970181
Target:  5'- gCGACGUaCaACCgGAUGUugCUGUg -3'
miRNA:   3'- gGCUGCAaGaUGGgCUACAugGGCGg -5'
10738 5' -53.5 NC_002794.1 + 138924 0.67 0.982117
Target:  5'- gCGGCGgauggUCUG-CCGGUGcGCCC-CCa -3'
miRNA:   3'- gGCUGCa----AGAUgGGCUACaUGGGcGG- -5'
10738 5' -53.5 NC_002794.1 + 137876 0.66 0.987295
Target:  5'- gCGGCG-UCUGgUgGgcGaUGCCCGCCa -3'
miRNA:   3'- gGCUGCaAGAUgGgCuaC-AUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 137437 0.66 0.990044
Target:  5'- gCCGGCGcUCUggaacgACUCGGcgGaAUCCGCCg -3'
miRNA:   3'- -GGCUGCaAGA------UGGGCUa-CaUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 137112 0.66 0.987295
Target:  5'- uCCG-CGacCUcccGCCCGAacUGUcguccguccGCCCGCCc -3'
miRNA:   3'- -GGCuGCaaGA---UGGGCU--ACA---------UGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 136995 0.7 0.923978
Target:  5'- gCGAUGUUCUccgcggacaggaGCCCGGggaucagguucagGUGCUCGUCg -3'
miRNA:   3'- gGCUGCAAGA------------UGGGCUa------------CAUGGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 135491 0.73 0.797512
Target:  5'- gUCGACGcgCgcggGCCCGAU--GCCCGCa -3'
miRNA:   3'- -GGCUGCaaGa---UGGGCUAcaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 135449 0.76 0.654361
Target:  5'- cCCGACGggCU-CCCGGg--GCCCGCg -3'
miRNA:   3'- -GGCUGCaaGAuGGGCUacaUGGGCGg -5'
10738 5' -53.5 NC_002794.1 + 130633 0.65 0.992099
Target:  5'- uUCGGCG-UCgccgGCCCGcccgccgcCCCGCCg -3'
miRNA:   3'- -GGCUGCaAGa---UGGGCuacau---GGGCGG- -5'
10738 5' -53.5 NC_002794.1 + 125649 0.67 0.983994
Target:  5'- gCGGCGUUCUGCCUcg---GCgCGCUg -3'
miRNA:   3'- gGCUGCAAGAUGGGcuacaUGgGCGG- -5'
10738 5' -53.5 NC_002794.1 + 125038 0.66 0.991232
Target:  5'- aCGGCGcagauCCUGGUGcacgcgaACCCGCCg -3'
miRNA:   3'- gGCUGCaagauGGGCUACa------UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.