Results 41 - 60 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 191182 | 0.66 | 0.991232 |
Target: 5'- aUCGuCGcgCUcGCCCGGcc-GCCCGCCc -3' miRNA: 3'- -GGCuGCaaGA-UGGGCUacaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 191523 | 0.66 | 0.991232 |
Target: 5'- gCCGGgCGUcg-GCCCGcgccuCCCGCCg -3' miRNA: 3'- -GGCU-GCAagaUGGGCuacauGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 62546 | 0.66 | 0.991232 |
Target: 5'- cCCGACGccc-AUCCGG---ACCCGCCc -3' miRNA: 3'- -GGCUGCaagaUGGGCUacaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 182994 | 0.65 | 0.992099 |
Target: 5'- gCCGGCGcUUCgccgcgggcgcCCCGcgcGcGCCCGCCg -3' miRNA: 3'- -GGCUGC-AAGau---------GGGCua-CaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 130633 | 0.65 | 0.992099 |
Target: 5'- uUCGGCG-UCgccgGCCCGcccgccgcCCCGCCg -3' miRNA: 3'- -GGCUGCaAGa---UGGGCuacau---GGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 109411 | 0.66 | 0.991118 |
Target: 5'- gCGACGccg-GCCCG-UGUACgugcacugagggaCCGCCg -3' miRNA: 3'- gGCUGCaagaUGGGCuACAUG-------------GGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 111833 | 0.66 | 0.991232 |
Target: 5'- -aGGCGcggaacgUCUGCCCGAga-GCCguCGCCa -3' miRNA: 3'- ggCUGCa------AGAUGGGCUacaUGG--GCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 67053 | 0.66 | 0.987295 |
Target: 5'- cCCGGCGUccgugggcuccUCgcugGCCuUGAUGUACgUGUCg -3' miRNA: 3'- -GGCUGCA-----------AGa---UGG-GCUACAUGgGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 137876 | 0.66 | 0.987295 |
Target: 5'- gCGGCG-UCUGgUgGgcGaUGCCCGCCa -3' miRNA: 3'- gGCUGCaAGAUgGgCuaC-AUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 137112 | 0.66 | 0.987295 |
Target: 5'- uCCG-CGacCUcccGCCCGAacUGUcguccguccGCCCGCCc -3' miRNA: 3'- -GGCuGCaaGA---UGGGCU--ACA---------UGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 186894 | 0.66 | 0.988317 |
Target: 5'- uCCGGCGUccgcaggaccagguUCcgGCCCcaguaGUGCgCCGCCa -3' miRNA: 3'- -GGCUGCA--------------AGa-UGGGcua--CAUG-GGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 24038 | 0.66 | 0.988735 |
Target: 5'- aCGGCGguccCUcCCCGucc-GCCCGCCc -3' miRNA: 3'- gGCUGCaa--GAuGGGCuacaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 18589 | 0.66 | 0.988457 |
Target: 5'- aCGACGgaacacaacacgUCUACCuCGAcgGcACCgGCCg -3' miRNA: 3'- gGCUGCa-----------AGAUGG-GCUa-CaUGGgCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 183207 | 0.66 | 0.988871 |
Target: 5'- gCCGGCGgcgcguucgUCgccagcgaccaggcgACCCGAcacgcgGcgGCCCGCCa -3' miRNA: 3'- -GGCUGCa--------AGa--------------UGGGCUa-----Ca-UGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 152845 | 0.66 | 0.988735 |
Target: 5'- gCGACGc-CUACgCGcUGUACCUgGCCu -3' miRNA: 3'- gGCUGCaaGAUGgGCuACAUGGG-CGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 81257 | 0.66 | 0.988735 |
Target: 5'- aCGACGcgCUGgCCuuc--GCCCGCCa -3' miRNA: 3'- gGCUGCaaGAUgGGcuacaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 50333 | 0.66 | 0.990044 |
Target: 5'- gUCGAUGUUggGCUCGGUcaccgGCuCCGCCa -3' miRNA: 3'- -GGCUGCAAgaUGGGCUAca---UG-GGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 102044 | 0.66 | 0.989919 |
Target: 5'- gCCGGCGUUCcucGCgcgcuucuucgagCCGGgcgACCUGCCg -3' miRNA: 3'- -GGCUGCAAGa--UG-------------GGCUacaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 137437 | 0.66 | 0.990044 |
Target: 5'- gCCGGCGcUCUggaacgACUCGGcgGaAUCCGCCg -3' miRNA: 3'- -GGCUGCaAGA------UGGGCUa-CaUGGGCGG- -5' |
|||||||
10738 | 5' | -53.5 | NC_002794.1 | + | 117003 | 0.66 | 0.990044 |
Target: 5'- gCGGCG-UCUcGCCCag-GUACCaGCCg -3' miRNA: 3'- gGCUGCaAGA-UGGGcuaCAUGGgCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home