miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10739 3' -53 NC_002794.1 + 80421 0.66 0.989655
Target:  5'- uGGCGCCGGGCGgGGc----------- -3'
miRNA:   3'- -CCGCGGCCCGCgCUaauccuuuaaga -5'
10739 3' -53 NC_002794.1 + 101823 0.66 0.989655
Target:  5'- cGCGCCGuGCGCGAggccaugcGGGAGUg-- -3'
miRNA:   3'- cCGCGGCcCGCGCUaau-----CCUUUAaga -5'
10739 3' -53 NC_002794.1 + 180659 0.66 0.989655
Target:  5'- aGCGCaGGGCGUGcc-GGGGAAcUCg -3'
miRNA:   3'- cCGCGgCCCGCGCuaaUCCUUUaAGa -5'
10739 3' -53 NC_002794.1 + 106417 0.66 0.988271
Target:  5'- cGGCGCCGgggcucauGGCGCuGUUGGaGAAGg--- -3'
miRNA:   3'- -CCGCGGC--------CCGCGcUAAUC-CUUUaaga -5'
10739 3' -53 NC_002794.1 + 95603 0.66 0.988271
Target:  5'- cGGCGCCGGaGCGCaucguGGAc----- -3'
miRNA:   3'- -CCGCGGCC-CGCGcuaauCCUuuaaga -5'
10739 3' -53 NC_002794.1 + 121582 0.66 0.988271
Target:  5'- aGCGUgaCGGGCGCG---GGGucGUUCg -3'
miRNA:   3'- cCGCG--GCCCGCGCuaaUCCuuUAAGa -5'
10739 3' -53 NC_002794.1 + 107886 0.66 0.986746
Target:  5'- cGGCGCggCGGGUGCGGcUgccgggucugaGGGAAGUg-- -3'
miRNA:   3'- -CCGCG--GCCCGCGCUaA-----------UCCUUUAaga -5'
10739 3' -53 NC_002794.1 + 9735 0.66 0.986746
Target:  5'- aGGCaCCGGGUGgGuaggUGGGggGggggUCa -3'
miRNA:   3'- -CCGcGGCCCGCgCua--AUCCuuUa---AGa -5'
10739 3' -53 NC_002794.1 + 66844 0.66 0.986746
Target:  5'- gGGCGCCGccgucGGCGCGGcgAGGc------ -3'
miRNA:   3'- -CCGCGGC-----CCGCGCUaaUCCuuuaaga -5'
10739 3' -53 NC_002794.1 + 94779 0.66 0.986746
Target:  5'- aGGCGCUGGGCGaguuCGAgcggcacGGGGAUg-- -3'
miRNA:   3'- -CCGCGGCCCGC----GCUaau----CCUUUAaga -5'
10739 3' -53 NC_002794.1 + 70303 0.66 0.985074
Target:  5'- gGGC-CCGGGCGCGAagAGccgcUUCg -3'
miRNA:   3'- -CCGcGGCCCGCGCUaaUCcuuuAAGa -5'
10739 3' -53 NC_002794.1 + 156449 0.66 0.985074
Target:  5'- cGCGCCGaaGGCGguUGGUUAGGggGc--- -3'
miRNA:   3'- cCGCGGC--CCGC--GCUAAUCCuuUaaga -5'
10739 3' -53 NC_002794.1 + 123800 0.66 0.985074
Target:  5'- uGGCGCCguucggGGGCGCGGacgagcAGGAGc---- -3'
miRNA:   3'- -CCGCGG------CCCGCGCUaa----UCCUUuaaga -5'
10739 3' -53 NC_002794.1 + 124141 0.66 0.985074
Target:  5'- cGGCGcCCGGGagcggucucCGCGGggcccGGGAGAgcgUCg -3'
miRNA:   3'- -CCGC-GGCCC---------GCGCUaa---UCCUUUa--AGa -5'
10739 3' -53 NC_002794.1 + 126704 0.66 0.984899
Target:  5'- gGGCGCCGcggacucGGgGCGA--GGGggGUg-- -3'
miRNA:   3'- -CCGCGGC-------CCgCGCUaaUCCuuUAaga -5'
10739 3' -53 NC_002794.1 + 14605 0.67 0.979089
Target:  5'- cGCGCCGGGCaccGCGAcgGGGc------ -3'
miRNA:   3'- cCGCGGCCCG---CGCUaaUCCuuuaaga -5'
10739 3' -53 NC_002794.1 + 109536 0.67 0.979089
Target:  5'- cGGCGUCGGGC-CGGgc-GGAccggUCUa -3'
miRNA:   3'- -CCGCGGCCCGcGCUaauCCUuua-AGA- -5'
10739 3' -53 NC_002794.1 + 121404 0.67 0.976744
Target:  5'- cGGCGCCGGGacCGCGAccgucgccGGGAc----- -3'
miRNA:   3'- -CCGCGGCCC--GCGCUaa------UCCUuuaaga -5'
10739 3' -53 NC_002794.1 + 107316 0.67 0.976744
Target:  5'- gGGCGCCGuccGCGCGGUUcGGc--UUCg -3'
miRNA:   3'- -CCGCGGCc--CGCGCUAAuCCuuuAAGa -5'
10739 3' -53 NC_002794.1 + 107215 0.67 0.976499
Target:  5'- cGGCGCCgccgggcGGcGCGCGAcgGGGGcgGcgUCg -3'
miRNA:   3'- -CCGCGG-------CC-CGCGCUaaUCCU--UuaAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.