miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10739 5' -60.8 NC_002794.1 + 107508 0.66 0.78748
Target:  5'- aCGGGGGUgCCggucgacgccgacggCCGgcGcGGCGCCGGCGg -3'
miRNA:   3'- cGUCUCCA-GG---------------GGCuaC-UCGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 93966 0.66 0.78748
Target:  5'- gGUGGAGGacuuuUCCCUGAccgcGcucggcgcggacgccGGCGCCGGCGg -3'
miRNA:   3'- -CGUCUCC-----AGGGGCUa---C---------------UCGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 35681 0.66 0.78398
Target:  5'- --cGAGGUCaUCCGGgaaGAGUGCCcGGCc -3'
miRNA:   3'- cguCUCCAG-GGGCUa--CUCGCGG-CCGu -5'
10739 5' -60.8 NC_002794.1 + 116940 0.66 0.78398
Target:  5'- uCGGc-GUCCCCGgcGgcGGCGUCGGCGg -3'
miRNA:   3'- cGUCucCAGGGGCuaC--UCGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 4167 0.66 0.78398
Target:  5'- gGUAGGGGUCgUCgCGGUGGGuCGUCgaGGCAa -3'
miRNA:   3'- -CGUCUCCAG-GG-GCUACUC-GCGG--CCGU- -5'
10739 5' -60.8 NC_002794.1 + 68843 0.66 0.78398
Target:  5'- cGCucgcGGUCCCCGAcgaccccgGAGCucgggcucGCCGGCc -3'
miRNA:   3'- -CGucu-CCAGGGGCUa-------CUCG--------CGGCCGu -5'
10739 5' -60.8 NC_002794.1 + 182013 0.66 0.78398
Target:  5'- aGCccGGGaCCCCGGcguccGGGcCGCCGGCGa -3'
miRNA:   3'- -CGucUCCaGGGGCUa----CUC-GCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 43492 0.66 0.775145
Target:  5'- aGCGGA--UCCCCuccgccaggccGGUGAaagcGCGCCGGUAg -3'
miRNA:   3'- -CGUCUccAGGGG-----------CUACU----CGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 44094 0.66 0.775145
Target:  5'- gGCAGuaacGGUgCgCCGAcGAGCGCC-GCAu -3'
miRNA:   3'- -CGUCu---CCAgG-GGCUaCUCGCGGcCGU- -5'
10739 5' -60.8 NC_002794.1 + 19437 0.66 0.775145
Target:  5'- cGCGaccAGG-CCCCGAgcgggcacGAGCGgCGGCGg -3'
miRNA:   3'- -CGUc--UCCaGGGGCUa-------CUCGCgGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 128821 0.66 0.775145
Target:  5'- gGCGGcucGGaCUCUGucugauccUGAGCGCCGGCGu -3'
miRNA:   3'- -CGUCu--CCaGGGGCu-------ACUCGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 21887 0.66 0.766194
Target:  5'- cGCGGGGuGUCCgCGGccuGCGUCGGUg -3'
miRNA:   3'- -CGUCUC-CAGGgGCUacuCGCGGCCGu -5'
10739 5' -60.8 NC_002794.1 + 191510 0.66 0.766194
Target:  5'- -gAGAGGUgCCagCGccGGGCGUCGGCc -3'
miRNA:   3'- cgUCUCCAgGG--GCuaCUCGCGGCCGu -5'
10739 5' -60.8 NC_002794.1 + 121318 0.66 0.766194
Target:  5'- gGCGGuuGGcCCUCGA--GGCGCCGcGCGg -3'
miRNA:   3'- -CGUCu-CCaGGGGCUacUCGCGGC-CGU- -5'
10739 5' -60.8 NC_002794.1 + 8123 0.66 0.757134
Target:  5'- gGCGGcGGccUCCUCGGUGAccgGCGaCGGCAc -3'
miRNA:   3'- -CGUCuCC--AGGGGCUACU---CGCgGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 143259 0.66 0.757134
Target:  5'- uGCAgGAGGaaggCCCGGcccGGCGCCGGCc -3'
miRNA:   3'- -CGU-CUCCag--GGGCUac-UCGCGGCCGu -5'
10739 5' -60.8 NC_002794.1 + 184749 0.66 0.757134
Target:  5'- cGCGccGGUCCagcguuccaCGGUcAGCGCCGGCu -3'
miRNA:   3'- -CGUcuCCAGGg--------GCUAcUCGCGGCCGu -5'
10739 5' -60.8 NC_002794.1 + 108395 0.66 0.747975
Target:  5'- aGCGGAGG-CUCCGgcGgcGGCGCCcaccacGGCGc -3'
miRNA:   3'- -CGUCUCCaGGGGCuaC--UCGCGG------CCGU- -5'
10739 5' -60.8 NC_002794.1 + 20945 0.66 0.747975
Target:  5'- cGCAcGGGUcgCCCCGAUc--CGCUGGCAa -3'
miRNA:   3'- -CGUcUCCA--GGGGCUAcucGCGGCCGU- -5'
10739 5' -60.8 NC_002794.1 + 70043 0.66 0.738723
Target:  5'- aGCAGcacguAGGUCgCCCGGUcGGGCgGCC-GCAg -3'
miRNA:   3'- -CGUC-----UCCAG-GGGCUA-CUCG-CGGcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.