miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 136740 0.66 0.764487
Target:  5'- cGGUCGagguucgucuccCCG-AGCUGGCGGA-CgCGCGc -3'
miRNA:   3'- -UCAGC------------GGCuUCGGCCGCCUaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 31371 0.66 0.764487
Target:  5'- aAGUCGuccuccuccCCGucGUCGGCGGc-CCCGCc -3'
miRNA:   3'- -UCAGC---------GGCuuCGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 67213 0.66 0.764487
Target:  5'- cGGUgCGCuCGgcGCCgGGCGGcuaaCCGCGu -3'
miRNA:   3'- -UCA-GCG-GCuuCGG-CCGCCuag-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 69729 0.66 0.764487
Target:  5'- gAGUgcCGCCGGagcgccacGGCCGGCGacg-CCGCGg -3'
miRNA:   3'- -UCA--GCGGCU--------UCGGCCGCcuagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 13093 0.66 0.764487
Target:  5'- aAGUC-CCGggGgacgaggugcguUCGGCgGGGUCgCCGCGc -3'
miRNA:   3'- -UCAGcGGCuuC------------GGCCG-CCUAG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 90773 0.66 0.764487
Target:  5'- --gCGCCGcuGCUGGUGGA-CCUGaCGg -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCUaGGGC-GC- -5'
10740 3' -61.8 NC_002794.1 + 63980 0.66 0.763597
Target:  5'- --cCGCCGugacccgcaAAGCgGGCuccgucuGGGUCCUGCGg -3'
miRNA:   3'- ucaGCGGC---------UUCGgCCG-------CCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 138413 0.66 0.761813
Target:  5'- cGUCGCCGGccgccgacucgucgAGCCgcgguggcGGCGGcgccucggCCUGCGa -3'
miRNA:   3'- uCAGCGGCU--------------UCGG--------CCGCCua------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 142039 0.66 0.755538
Target:  5'- uGUCGCgGGAccguaCCGGCGGuUCCgGUGc -3'
miRNA:   3'- uCAGCGgCUUc----GGCCGCCuAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 91868 0.66 0.755538
Target:  5'- gGGUC-CCGggGgUGGCGGcggcggCCGCGa -3'
miRNA:   3'- -UCAGcGGCuuCgGCCGCCuag---GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 142339 0.66 0.755538
Target:  5'- gAGgCGgCGGAGgCGGCGGAggCgGCGg -3'
miRNA:   3'- -UCaGCgGCUUCgGCCGCCUagGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 107876 0.66 0.755538
Target:  5'- -aUCGCgGAGGCggcgCGGCGGGUgCgGCu -3'
miRNA:   3'- ucAGCGgCUUCG----GCCGCCUAgGgCGc -5'
10740 3' -61.8 NC_002794.1 + 115955 0.66 0.752834
Target:  5'- uGUCGCCGGggaccgugggggggAGCgGGaCGGGgagcggCgCCGCGg -3'
miRNA:   3'- uCAGCGGCU--------------UCGgCC-GCCUa-----G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 52804 0.66 0.746493
Target:  5'- -cUCGUCGGAcGCCGGCaGcucGUCCUGCc -3'
miRNA:   3'- ucAGCGGCUU-CGGCCGcC---UAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 143742 0.66 0.746493
Target:  5'- --cCGCCGGAcgcgccGCCGGgGGGcUCCGCu -3'
miRNA:   3'- ucaGCGGCUU------CGGCCgCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 116499 0.66 0.746493
Target:  5'- aAGUCguagauGCCGAGGCaGGCGuagccguccaGGUCCCGgGu -3'
miRNA:   3'- -UCAG------CGGCUUCGgCCGC----------CUAGGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 114461 0.66 0.746493
Target:  5'- uGUCGCCGcAGCCG-CaGGAgacCCaCGCGu -3'
miRNA:   3'- uCAGCGGCuUCGGCcG-CCUa--GG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 82737 0.66 0.746493
Target:  5'- -cUCGCCGcGAGCCGccgccaccgccGCGGAcucgCuCCGCGa -3'
miRNA:   3'- ucAGCGGC-UUCGGC-----------CGCCUa---G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 111634 0.66 0.746493
Target:  5'- ---gGCCGccGCCGGuCGGG-CgCCGCGg -3'
miRNA:   3'- ucagCGGCuuCGGCC-GCCUaG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 4185 0.66 0.746493
Target:  5'- gGGUCGUCGAGGCaaGGC-GAUgCUGUGa -3'
miRNA:   3'- -UCAGCGGCUUCGg-CCGcCUAgGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.