miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 136381 0.67 0.66202
Target:  5'- aGGUCGuuGAGcaCCGGCuccGGGUCgCGCGu -3'
miRNA:   3'- -UCAGCggCUUc-GGCCG---CCUAGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 145473 0.67 0.66202
Target:  5'- cGGUCGCCGAAgGCCGa-GGAUCgCGa- -3'
miRNA:   3'- -UCAGCGGCUU-CGGCcgCCUAGgGCgc -5'
10740 3' -61.8 NC_002794.1 + 43627 0.67 0.66202
Target:  5'- uGGcCGCCaGGAGCUGGUGGAacacgcUgCCGCc -3'
miRNA:   3'- -UCaGCGG-CUUCGGCCGCCU------AgGGCGc -5'
10740 3' -61.8 NC_002794.1 + 21996 0.67 0.66202
Target:  5'- cGUCGCCGGcaAGCCGGCcaaggCgUGCGa -3'
miRNA:   3'- uCAGCGGCU--UCGGCCGccua-GgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 190355 0.67 0.652431
Target:  5'- aGGUCGUCGGccgcgcGGCgCaGCGGGugcUCCCGCu -3'
miRNA:   3'- -UCAGCGGCU------UCG-GcCGCCU---AGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 75373 0.67 0.656268
Target:  5'- --cCGCCGcGGCCGGCGGcggcggccucuccccGUCCCu-- -3'
miRNA:   3'- ucaGCGGCuUCGGCCGCC---------------UAGGGcgc -5'
10740 3' -61.8 NC_002794.1 + 189573 0.67 0.671588
Target:  5'- cGGUCgGCCGGcccgGGCCGGCGccccuuagCCCGUc -3'
miRNA:   3'- -UCAG-CGGCU----UCGGCCGCcua-----GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 77965 0.67 0.680176
Target:  5'- cGUCGCCGAGccgacuccuccGCCucggaacGGCGGGcguuguUCCgGCGg -3'
miRNA:   3'- uCAGCGGCUU-----------CGG-------CCGCCU------AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 58009 0.67 0.679222
Target:  5'- cGUCGCCGccggggccgccGCCGGCGaa-CCCGCc -3'
miRNA:   3'- uCAGCGGCuu---------CGGCCGCcuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 86905 0.67 0.694422
Target:  5'- gGGcCGCCGAcccggugacgcccguGGCgGGCaggcggggcgGGAUCCgGCGa -3'
miRNA:   3'- -UCaGCGGCU---------------UCGgCCG----------CCUAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 50904 0.67 0.700094
Target:  5'- --cCGCCGAcuccagcuGCCGGagcuCGGAcucgCCCGCGg -3'
miRNA:   3'- ucaGCGGCUu-------CGGCC----GCCUa---GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42485 0.67 0.700094
Target:  5'- --gCGCCGggGCCGaGCGGAgagUGUGa -3'
miRNA:   3'- ucaGCGGCuuCGGC-CGCCUaggGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44268 0.67 0.690632
Target:  5'- cGGcCGCCGggGaCGGaGGAgUCCGCGc -3'
miRNA:   3'- -UCaGCGGCuuCgGCCgCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 96904 0.67 0.690632
Target:  5'- cGUCgGgCGGAGgUGGCGGAggcgCCgGCGa -3'
miRNA:   3'- uCAG-CgGCUUCgGCCGCCUa---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 106342 0.67 0.689684
Target:  5'- cGGuUCGCCGGgucgacGGCgGGCGGGcgccgguUCgCGCGg -3'
miRNA:   3'- -UC-AGCGGCU------UCGgCCGCCU-------AGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 148802 0.67 0.684934
Target:  5'- cGUCGCCG-AGCaC-GCGGAgaucuggagacugcCCCGCGa -3'
miRNA:   3'- uCAGCGGCuUCG-GcCGCCUa-------------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 61825 0.67 0.681128
Target:  5'- cGGcCGCCGGcGGCCGGCGucacUCCGCu -3'
miRNA:   3'- -UCaGCGGCU-UCGGCCGCcua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 34794 0.67 0.681128
Target:  5'- gAGUCgGCCGAA-CCGGCccGGG-CCgCGCGa -3'
miRNA:   3'- -UCAG-CGGCUUcGGCCG--CCUaGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 15182 0.67 0.681128
Target:  5'- -uUCGCCGGAGaCCGG-GuGAacgaccgCCCGCGa -3'
miRNA:   3'- ucAGCGGCUUC-GGCCgC-CUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 145812 0.67 0.652431
Target:  5'- --aCGCCGccGCCGGCGGcgagCCgagCGCGu -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCua--GG---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.