Results 61 - 80 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 3' | -61.8 | NC_002794.1 | + | 145913 | 0.7 | 0.519545 |
Target: 5'- gAGUCGaCCGc-GCCGaGCGGAggggCCgGCGa -3' miRNA: 3'- -UCAGC-GGCuuCGGC-CGCCUa---GGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 105758 | 0.7 | 0.527852 |
Target: 5'- cGUCGCCGuucaucgGGGUCGGUGGG--CCGCGu -3' miRNA: 3'- uCAGCGGC-------UUCGGCCGCCUagGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 42205 | 0.7 | 0.492244 |
Target: 5'- -cUCGCCGccGCCGGUcugccgcuGGAUCagCCGCGa -3' miRNA: 3'- ucAGCGGCuuCGGCCG--------CCUAG--GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 16295 | 0.7 | 0.48329 |
Target: 5'- gAGUCuagccuggcgGCCGcGGCCGGCuGGAUCCCccuGCc -3' miRNA: 3'- -UCAG----------CGGCuUCGGCCG-CCUAGGG---CGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 187763 | 0.7 | 0.486862 |
Target: 5'- cGcCGCCGgcGCCGGUcgccucgaccccggaGGAacggCCCGCGa -3' miRNA: 3'- uCaGCGGCuuCGGCCG---------------CCUa---GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 129747 | 0.7 | 0.492244 |
Target: 5'- -cUCGCCGcguucuGGuacuucggauaCCGGUGGAUCCUGCGa -3' miRNA: 3'- ucAGCGGCu-----UC-----------GGCCGCCUAGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 35779 | 0.7 | 0.528779 |
Target: 5'- cGUCGCCGgcGucgucuCCGGCGuGAcCCUGCGc -3' miRNA: 3'- uCAGCGGCuuC------GGCCGC-CUaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 182552 | 0.7 | 0.519545 |
Target: 5'- --gCGCCGcGGCCGGCaccgucaccgGGAUCuCCGUGc -3' miRNA: 3'- ucaGCGGCuUCGGCCG----------CCUAG-GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 62326 | 0.7 | 0.48329 |
Target: 5'- --cCGCCccucGCUGGCGGAgCCCGCGc -3' miRNA: 3'- ucaGCGGcuu-CGGCCGCCUaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 182986 | 0.7 | 0.501273 |
Target: 5'- ---aGCCGAcGGCCGGCGcuUCgCCGCGg -3' miRNA: 3'- ucagCGGCU-UCGGCCGCcuAG-GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 112241 | 0.7 | 0.519545 |
Target: 5'- gGGcCGCCGcgaacgccGCCGGCGGGaCCgGCGu -3' miRNA: 3'- -UCaGCGGCuu------CGGCCGCCUaGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 151593 | 0.7 | 0.510375 |
Target: 5'- --gCGCCGccGCC-GCGGG-CCCGCGg -3' miRNA: 3'- ucaGCGGCuuCGGcCGCCUaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 123445 | 0.69 | 0.538072 |
Target: 5'- cGUCGCCGAgcGGCUGGCcGAgcaCCUGUa -3' miRNA: 3'- uCAGCGGCU--UCGGCCGcCUa--GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 105901 | 0.69 | 0.556822 |
Target: 5'- gAGUCGCCGcGG-CGGCGGcgCuaCCGCc -3' miRNA: 3'- -UCAGCGGCuUCgGCCGCCuaG--GGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 184911 | 0.69 | 0.538072 |
Target: 5'- -cUCGCgCGGgaacaucggcAGCCGGCGGucGUCCUGCc -3' miRNA: 3'- ucAGCG-GCU----------UCGGCCGCC--UAGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 180921 | 0.69 | 0.547421 |
Target: 5'- -cUCGCCGgcGCCGuCGGAggucggUCUCGCGu -3' miRNA: 3'- ucAGCGGCuuCGGCcGCCU------AGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 149351 | 0.69 | 0.538072 |
Target: 5'- gGGUCGCgGggGCgUGGaCGGAgUCCGCc -3' miRNA: 3'- -UCAGCGgCuuCG-GCC-GCCUaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 110437 | 0.69 | 0.538072 |
Target: 5'- uGUCGUCGucGgUGGCGGAggCCgGCGa -3' miRNA: 3'- uCAGCGGCuuCgGCCGCCUa-GGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 187050 | 0.69 | 0.547421 |
Target: 5'- cAGUC-CCGGAGCCcGCGG--CCCGCc -3' miRNA: 3'- -UCAGcGGCUUCGGcCGCCuaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 48623 | 0.69 | 0.556822 |
Target: 5'- cAGaCGCgGAgcGGCCGuCGGggCCCGCGa -3' miRNA: 3'- -UCaGCGgCU--UCGGCcGCCuaGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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