miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 58864 0.69 0.565321
Target:  5'- cGUCGCCGAccggcAGCCGuGCGcgccgcgcagcucGAggCCCGCa -3'
miRNA:   3'- uCAGCGGCU-----UCGGC-CGC-------------CUa-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 105901 0.69 0.556822
Target:  5'- gAGUCGCCGcGG-CGGCGGcgCuaCCGCc -3'
miRNA:   3'- -UCAGCGGCuUCgGCCGCCuaG--GGCGc -5'
10740 3' -61.8 NC_002794.1 + 61515 0.69 0.547421
Target:  5'- --cCGCCGGAcggcggccGCCGGCGGccgCCGCGa -3'
miRNA:   3'- ucaGCGGCUU--------CGGCCGCCuagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 187050 0.69 0.547421
Target:  5'- cAGUC-CCGGAGCCcGCGG--CCCGCc -3'
miRNA:   3'- -UCAGcGGCUUCGGcCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 123445 0.69 0.538072
Target:  5'- cGUCGCCGAgcGGCUGGCcGAgcaCCUGUa -3'
miRNA:   3'- uCAGCGGCU--UCGGCCGcCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 184911 0.69 0.538072
Target:  5'- -cUCGCgCGGgaacaucggcAGCCGGCGGucGUCCUGCc -3'
miRNA:   3'- ucAGCG-GCU----------UCGGCCGCC--UAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 149351 0.69 0.538072
Target:  5'- gGGUCGCgGggGCgUGGaCGGAgUCCGCc -3'
miRNA:   3'- -UCAGCGgCuuCG-GCC-GCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 48623 0.69 0.556822
Target:  5'- cAGaCGCgGAgcGGCCGuCGGggCCCGCGa -3'
miRNA:   3'- -UCaGCGgCU--UCGGCcGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 119506 0.69 0.556822
Target:  5'- gGGUCGUCGGcggcgcggAGCCGGCcgcGGAccccucgUCCGCGg -3'
miRNA:   3'- -UCAGCGGCU--------UCGGCCG---CCUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 111085 0.69 0.556822
Target:  5'- cGUCGgCaGGGUCGGCGGG-CCCgGCGg -3'
miRNA:   3'- uCAGCgGcUUCGGCCGCCUaGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 100233 0.69 0.566267
Target:  5'- aGGUCuUCGAGGUCGGCGucagCCCGCu -3'
miRNA:   3'- -UCAGcGGCUUCGGCCGCcua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 183609 0.69 0.566267
Target:  5'- gGGcCGCgCGcGGCCGGCGcc-CCCGCGc -3'
miRNA:   3'- -UCaGCG-GCuUCGGCCGCcuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 49841 0.69 0.575754
Target:  5'- gAGgCGCCGccauuccgcGUCGGCGGcgCCCGCc -3'
miRNA:   3'- -UCaGCGGCuu-------CGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 114199 0.69 0.575754
Target:  5'- cGG-CGCCacGGCCGGCGucUCCgGCGg -3'
miRNA:   3'- -UCaGCGGcuUCGGCCGCcuAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 110437 0.69 0.538072
Target:  5'- uGUCGUCGucGgUGGCGGAggCCgGCGa -3'
miRNA:   3'- uCAGCGGCuuCgGCCGCCUa-GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 96742 0.68 0.591959
Target:  5'- --cCGCCGGcgcgucucgcaagcGGCCGGCGGucgagucgCCCGgGg -3'
miRNA:   3'- ucaGCGGCU--------------UCGGCCGCCua------GGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 17130 0.68 0.623604
Target:  5'- ---gGUCGAAGCCGGCGaaacggcgguaGcgCCCGUGa -3'
miRNA:   3'- ucagCGGCUUCGGCCGC-----------CuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 118200 0.68 0.622643
Target:  5'- cGUCGCCGccGCCGucgccucGCGGAcggCCaCGCa -3'
miRNA:   3'- uCAGCGGCuuCGGC-------CGCCUa--GG-GCGc -5'
10740 3' -61.8 NC_002794.1 + 90953 0.68 0.623604
Target:  5'- uGUgCGCCGAGGCC--CGGG-CCCGCu -3'
miRNA:   3'- uCA-GCGGCUUCGGccGCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 17405 0.68 0.623604
Target:  5'- --cCGCCGAAGCCaccGCGGccaucgcgGUCuCCGCGc -3'
miRNA:   3'- ucaGCGGCUUCGGc--CGCC--------UAG-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.