miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 141142 1.08 0.001421
Target:  5'- gAGUCGCCGAAGCCGGCGGAUCCCGCGa -3'
miRNA:   3'- -UCAGCGGCUUCGGCCGCCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 94005 0.81 0.108329
Target:  5'- cGG-CGCCGGcggcgGGCCGGCGGGUUCCGCc -3'
miRNA:   3'- -UCaGCGGCU-----UCGGCCGCCUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 180864 0.81 0.113797
Target:  5'- -cUCGUCGGAGgCGGCGGAUCCgGCGc -3'
miRNA:   3'- ucAGCGGCUUCgGCCGCCUAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 188331 0.8 0.128614
Target:  5'- cGUCGCCGccGCCGGCGGcgCCguCGCGc -3'
miRNA:   3'- uCAGCGGCuuCGGCCGCCuaGG--GCGC- -5'
10740 3' -61.8 NC_002794.1 + 88362 0.78 0.16766
Target:  5'- --gCGCCGAAaCCGGCGGAcUCCCGCc -3'
miRNA:   3'- ucaGCGGCUUcGGCCGCCU-AGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 53758 0.77 0.212045
Target:  5'- cGcCGCCGcuGCCGGCGGcgggacgCCCGCGa -3'
miRNA:   3'- uCaGCGGCuuCGGCCGCCua-----GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 62055 0.77 0.217001
Target:  5'- cGGUgGCCGAcGCCGGCGGcgacgCCgGCGg -3'
miRNA:   3'- -UCAgCGGCUuCGGCCGCCua---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 12225 0.76 0.237822
Target:  5'- cGUCGgCGgcGCCGGCGGcgccgUCCGCGg -3'
miRNA:   3'- uCAGCgGCuuCGGCCGCCua---GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44544 0.76 0.248847
Target:  5'- cGUCGUCGucGCCGGCGGcggcgCCCGUu -3'
miRNA:   3'- uCAGCGGCuuCGGCCGCCua---GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 65173 0.75 0.26029
Target:  5'- uGG-CGCCGAGaCCGGCGGGUgCCgGCGa -3'
miRNA:   3'- -UCaGCGGCUUcGGCCGCCUA-GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 118261 0.75 0.272158
Target:  5'- aGGUCgGCCGggG-CGGCGGcgCCgGCGu -3'
miRNA:   3'- -UCAG-CGGCuuCgGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 153860 0.75 0.278254
Target:  5'- --cCGCCGu-GCCGGCGGAauUCCUGCc -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCU--AGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 14773 0.75 0.278254
Target:  5'- aGGcCGCUGAGGCCGGCGaGG-CCgGCGu -3'
miRNA:   3'- -UCaGCGGCUUCGGCCGC-CUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 66572 0.74 0.290771
Target:  5'- -aUCGCCGgcGCCGGCGGcagCCC-CGa -3'
miRNA:   3'- ucAGCGGCuuCGGCCGCCua-GGGcGC- -5'
10740 3' -61.8 NC_002794.1 + 41248 0.74 0.297192
Target:  5'- cGGcCGCCGAcGCCGGCGG--CCCGUc -3'
miRNA:   3'- -UCaGCGGCUuCGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 156200 0.74 0.317116
Target:  5'- gAGUCGCCGGucggagGGCCGGCGacuccgCCgGCGg -3'
miRNA:   3'- -UCAGCGGCU------UCGGCCGCcua---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 112335 0.74 0.323977
Target:  5'- gAGcgCGCCG--GCCGGCGGcgCCgGCGg -3'
miRNA:   3'- -UCa-GCGGCuuCGGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 128925 0.73 0.330948
Target:  5'- uGGUCGCCGAcgacgaacGuCCGGUGGAgCCUGCGc -3'
miRNA:   3'- -UCAGCGGCUu-------C-GGCCGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 192156 0.73 0.338029
Target:  5'- cGGUCGCggCGGAGCCuGCGGuagGUCCgGCGa -3'
miRNA:   3'- -UCAGCG--GCUUCGGcCGCC---UAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 186104 0.73 0.345219
Target:  5'- cGUCGCCGucGCCGccgcCGGGUCCC-CGg -3'
miRNA:   3'- uCAGCGGCuuCGGCc---GCCUAGGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.