miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 80040 0.73 0.345219
Target:  5'- -cUCGCCGAcaguGCCGGCGcGAg-CCGCGg -3'
miRNA:   3'- ucAGCGGCUu---CGGCCGC-CUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 126601 0.73 0.345219
Target:  5'- gAG-CGCCGAGGCCGGCGccGAcgUCGCGg -3'
miRNA:   3'- -UCaGCGGCUUCGGCCGC--CUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 107247 0.73 0.359927
Target:  5'- cGUCGCgGAccuGGcCCGGCGGAg-CCGCGc -3'
miRNA:   3'- uCAGCGgCU---UC-GGCCGCCUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 141651 0.73 0.359927
Target:  5'- cGUgGCCGcggccGCCGGCGGGUCgaGCGa -3'
miRNA:   3'- uCAgCGGCuu---CGGCCGCCUAGggCGC- -5'
10740 3' -61.8 NC_002794.1 + 102036 0.73 0.367443
Target:  5'- -uUCGCCG-AGCCGGCGu-UCCuCGCGc -3'
miRNA:   3'- ucAGCGGCuUCGGCCGCcuAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 146316 0.73 0.367443
Target:  5'- gGGcUCGCCGAcGCgCGGCGGAUucgacCCCGUc -3'
miRNA:   3'- -UC-AGCGGCUuCG-GCCGCCUA-----GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 72418 0.72 0.382796
Target:  5'- --cCGCCGcggcggaggagGAGCCGGCGGAgggaCCgGCGg -3'
miRNA:   3'- ucaGCGGC-----------UUCGGCCGCCUa---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 65923 0.72 0.390631
Target:  5'- cGUCGCCGgcGgCGGUGGcgUCgGCGg -3'
miRNA:   3'- uCAGCGGCuuCgGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 138131 0.72 0.39857
Target:  5'- cGUCGCCGGucucGGgCGGCGGuuUCuuGCGc -3'
miRNA:   3'- uCAGCGGCU----UCgGCCGCCu-AGggCGC- -5'
10740 3' -61.8 NC_002794.1 + 37742 0.72 0.39857
Target:  5'- cGcCGCCGGcggcGGCgCGGCGGcgCCgGCGg -3'
miRNA:   3'- uCaGCGGCU----UCG-GCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 145728 0.72 0.39857
Target:  5'- gGG-CGCUGGAGgCGGCGGcgCCgGCa -3'
miRNA:   3'- -UCaGCGGCUUCgGCCGCCuaGGgCGc -5'
10740 3' -61.8 NC_002794.1 + 72926 0.72 0.39857
Target:  5'- cGcCGUCGGAGCCGGCG--UCCgCGCGc -3'
miRNA:   3'- uCaGCGGCUUCGGCCGCcuAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 140015 0.72 0.406611
Target:  5'- aGGcCGCgGAGGCC-GCGGccCCCGCGg -3'
miRNA:   3'- -UCaGCGgCUUCGGcCGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 53638 0.72 0.406611
Target:  5'- aGGUCgGCCG-AGCCGGCG--UUCCGCa -3'
miRNA:   3'- -UCAG-CGGCuUCGGCCGCcuAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 126382 0.72 0.414754
Target:  5'- gGG-CGCCGggGCCugcgcGGCGGcgUgCGCGg -3'
miRNA:   3'- -UCaGCGGCuuCGG-----CCGCCuaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 107524 0.71 0.431335
Target:  5'- --aCGCCGAcGGCCGGCgcGGcgCCgGCGg -3'
miRNA:   3'- ucaGCGGCU-UCGGCCG--CCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 145577 0.71 0.431335
Target:  5'- gAG-CGCCGAcggagcggcGGCCGGC---UCCCGCGg -3'
miRNA:   3'- -UCaGCGGCU---------UCGGCCGccuAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 106466 0.71 0.431335
Target:  5'- cGUCGCCGugacUCGGCGcAUCCUGCGg -3'
miRNA:   3'- uCAGCGGCuuc-GGCCGCcUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 40608 0.71 0.43977
Target:  5'- cGUCGCCGgcGuCCGacuccGCGGAgUCCGCGa -3'
miRNA:   3'- uCAGCGGCuuC-GGC-----CGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 106223 0.71 0.43977
Target:  5'- cGUCGCCGcGGCCGcGCucGGGUCgcagaccgCCGCGa -3'
miRNA:   3'- uCAGCGGCuUCGGC-CG--CCUAG--------GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.