miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 82668 0.71 0.448298
Target:  5'- --aCGCCGc-GCCGGCGGAUCgCaCGCc -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCUAG-G-GCGc -5'
10740 3' -61.8 NC_002794.1 + 194019 0.71 0.448298
Target:  5'- cGGcCGCCGccGCCGGCGccucgCCCGCc -3'
miRNA:   3'- -UCaGCGGCuuCGGCCGCcua--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 141599 0.71 0.456916
Target:  5'- cGUCGCCGGgcGGCuCGGCGaccggCUCGCGg -3'
miRNA:   3'- uCAGCGGCU--UCG-GCCGCcua--GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 185185 0.71 0.456916
Target:  5'- cGGUCGgCGcGGUCGGCGcGGUCaUCGCGg -3'
miRNA:   3'- -UCAGCgGCuUCGGCCGC-CUAG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42682 0.71 0.465623
Target:  5'- gGGUaCGCCGAGaCCGGCGag-CCCGCc -3'
miRNA:   3'- -UCA-GCGGCUUcGGCCGCcuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 56309 0.71 0.465623
Target:  5'- cGGUCGCgGucGCUGGCGGccguggCCgGCGa -3'
miRNA:   3'- -UCAGCGgCuuCGGCCGCCua----GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 189406 0.71 0.465623
Target:  5'- uAGUcCGCCaGGGCCaGCGGGUUCUGCu -3'
miRNA:   3'- -UCA-GCGGcUUCGGcCGCCUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 90462 0.71 0.473533
Target:  5'- -uUCGgCGAGGCCgcgcgcGGCGGGgccgccgUCCCGCGc -3'
miRNA:   3'- ucAGCgGCUUCGG------CCGCCU-------AGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 135590 0.71 0.474416
Target:  5'- cGUCGCCGggGuCCGucgggucggaaGCGGAUCggUCGCa -3'
miRNA:   3'- uCAGCGGCuuC-GGC-----------CGCCUAG--GGCGc -5'
10740 3' -61.8 NC_002794.1 + 86832 0.71 0.474416
Target:  5'- -cUCGCCGGgaucgGGUCGGCGGc-CCCGCc -3'
miRNA:   3'- ucAGCGGCU-----UCGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 72338 0.71 0.474416
Target:  5'- cAGUCGgUGGAGCCGGUGGcgcugcaccGUCUgCGCGu -3'
miRNA:   3'- -UCAGCgGCUUCGGCCGCC---------UAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 32604 0.71 0.474416
Target:  5'- cGggGCCGggGCCGG-GGAUcgggCCCGCc -3'
miRNA:   3'- uCagCGGCuuCGGCCgCCUA----GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 111121 0.71 0.474416
Target:  5'- cGUCGaCGgcGCCGGCGGccggugcUCCaCGCGg -3'
miRNA:   3'- uCAGCgGCuuCGGCCGCCu------AGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 101582 0.71 0.474416
Target:  5'- cGGcCGCCGcGGCCGGgGGGgcgggugccggCCCGCc -3'
miRNA:   3'- -UCaGCGGCuUCGGCCgCCUa----------GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 71100 0.7 0.48329
Target:  5'- cGGUCGCCGGcggccuGGCCGGagaGGcgCUCGUu -3'
miRNA:   3'- -UCAGCGGCU------UCGGCCg--CCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 62326 0.7 0.48329
Target:  5'- --cCGCCccucGCUGGCGGAgCCCGCGc -3'
miRNA:   3'- ucaGCGGcuu-CGGCCGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 16295 0.7 0.48329
Target:  5'- gAGUCuagccuggcgGCCGcGGCCGGCuGGAUCCCccuGCc -3'
miRNA:   3'- -UCAG----------CGGCuUCGGCCG-CCUAGGG---CGc -5'
10740 3' -61.8 NC_002794.1 + 187763 0.7 0.486862
Target:  5'- cGcCGCCGgcGCCGGUcgccucgaccccggaGGAacggCCCGCGa -3'
miRNA:   3'- uCaGCGGCuuCGGCCG---------------CCUa---GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 181531 0.7 0.492244
Target:  5'- -uUCGcCCGccGCCGGCGGG-CCgGCGc -3'
miRNA:   3'- ucAGC-GGCuuCGGCCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 21870 0.7 0.492244
Target:  5'- cGGUC-CgCGAGGCCGGCcgcGGGgugUCCGCGg -3'
miRNA:   3'- -UCAGcG-GCUUCGGCCG---CCUa--GGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.