miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 181531 0.7 0.492244
Target:  5'- -uUCGcCCGccGCCGGCGGG-CCgGCGc -3'
miRNA:   3'- ucAGC-GGCuuCGGCCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 129747 0.7 0.492244
Target:  5'- -cUCGCCGcguucuGGuacuucggauaCCGGUGGAUCCUGCGa -3'
miRNA:   3'- ucAGCGGCu-----UC-----------GGCCGCCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 114737 0.7 0.501273
Target:  5'- gGGuUCGUCG-AGCCGGCGccgCCCGCc -3'
miRNA:   3'- -UC-AGCGGCuUCGGCCGCcuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 182986 0.7 0.501273
Target:  5'- ---aGCCGAcGGCCGGCGcuUCgCCGCGg -3'
miRNA:   3'- ucagCGGCU-UCGGCCGCcuAG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 151593 0.7 0.510375
Target:  5'- --gCGCCGccGCC-GCGGG-CCCGCGg -3'
miRNA:   3'- ucaGCGGCuuCGGcCGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 145913 0.7 0.519545
Target:  5'- gAGUCGaCCGc-GCCGaGCGGAggggCCgGCGa -3'
miRNA:   3'- -UCAGC-GGCuuCGGC-CGCCUa---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 182552 0.7 0.519545
Target:  5'- --gCGCCGcGGCCGGCaccgucaccgGGAUCuCCGUGc -3'
miRNA:   3'- ucaGCGGCuUCGGCCG----------CCUAG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 112241 0.7 0.519545
Target:  5'- gGGcCGCCGcgaacgccGCCGGCGGGaCCgGCGu -3'
miRNA:   3'- -UCaGCGGCuu------CGGCCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 105758 0.7 0.527852
Target:  5'- cGUCGCCGuucaucgGGGUCGGUGGG--CCGCGu -3'
miRNA:   3'- uCAGCGGC-------UUCGGCCGCCUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 35779 0.7 0.528779
Target:  5'- cGUCGCCGgcGucgucuCCGGCGuGAcCCUGCGc -3'
miRNA:   3'- uCAGCGGCuuC------GGCCGC-CUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 34838 0.7 0.528779
Target:  5'- cGG-CGCCGGAGCgGGCgucGGAgcgggCgCCGCGg -3'
miRNA:   3'- -UCaGCGGCUUCGgCCG---CCUa----G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 95009 0.7 0.528779
Target:  5'- uGUCGCUGAuggggcGGCUGuGCGGcAUCUCGCc -3'
miRNA:   3'- uCAGCGGCU------UCGGC-CGCC-UAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 123445 0.69 0.538072
Target:  5'- cGUCGCCGAgcGGCUGGCcGAgcaCCUGUa -3'
miRNA:   3'- uCAGCGGCU--UCGGCCGcCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 108379 0.69 0.538072
Target:  5'- gGG-CGCCGGAGCgGggaGCGGAggcUCCgGCGg -3'
miRNA:   3'- -UCaGCGGCUUCGgC---CGCCU---AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 149351 0.69 0.538072
Target:  5'- gGGUCGCgGggGCgUGGaCGGAgUCCGCc -3'
miRNA:   3'- -UCAGCGgCuuCG-GCC-GCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 184911 0.69 0.538072
Target:  5'- -cUCGCgCGGgaacaucggcAGCCGGCGGucGUCCUGCc -3'
miRNA:   3'- ucAGCG-GCU----------UCGGCCGCC--UAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 110437 0.69 0.538072
Target:  5'- uGUCGUCGucGgUGGCGGAggCCgGCGa -3'
miRNA:   3'- uCAGCGGCuuCgGCCGCCUa-GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 61515 0.69 0.547421
Target:  5'- --cCGCCGGAcggcggccGCCGGCGGccgCCGCGa -3'
miRNA:   3'- ucaGCGGCUU--------CGGCCGCCuagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 187050 0.69 0.547421
Target:  5'- cAGUC-CCGGAGCCcGCGG--CCCGCc -3'
miRNA:   3'- -UCAGcGGCUUCGGcCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 180921 0.69 0.547421
Target:  5'- -cUCGCCGgcGCCGuCGGAggucggUCUCGCGu -3'
miRNA:   3'- ucAGCGGCuuCGGCcGCCU------AGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.