miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 48623 0.69 0.556822
Target:  5'- cAGaCGCgGAgcGGCCGuCGGggCCCGCGa -3'
miRNA:   3'- -UCaGCGgCU--UCGGCcGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 105901 0.69 0.556822
Target:  5'- gAGUCGCCGcGG-CGGCGGcgCuaCCGCc -3'
miRNA:   3'- -UCAGCGGCuUCgGCCGCCuaG--GGCGc -5'
10740 3' -61.8 NC_002794.1 + 119506 0.69 0.556822
Target:  5'- gGGUCGUCGGcggcgcggAGCCGGCcgcGGAccccucgUCCGCGg -3'
miRNA:   3'- -UCAGCGGCU--------UCGGCCG---CCUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 111085 0.69 0.556822
Target:  5'- cGUCGgCaGGGUCGGCGGG-CCCgGCGg -3'
miRNA:   3'- uCAGCgGcUUCGGCCGCCUaGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 58864 0.69 0.565321
Target:  5'- cGUCGCCGAccggcAGCCGuGCGcgccgcgcagcucGAggCCCGCa -3'
miRNA:   3'- uCAGCGGCU-----UCGGC-CGC-------------CUa-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 183609 0.69 0.566267
Target:  5'- gGGcCGCgCGcGGCCGGCGcc-CCCGCGc -3'
miRNA:   3'- -UCaGCG-GCuUCGGCCGCcuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 137577 0.69 0.566267
Target:  5'- cGcCGCCGggGCCGGagugcgGGGagCCGCc -3'
miRNA:   3'- uCaGCGGCuuCGGCCg-----CCUagGGCGc -5'
10740 3' -61.8 NC_002794.1 + 100233 0.69 0.566267
Target:  5'- aGGUCuUCGAGGUCGGCGucagCCCGCu -3'
miRNA:   3'- -UCAGcGGCUUCGGCCGCcua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 104003 0.69 0.566267
Target:  5'- ---aGCCGccGCCGGCGGAacgccUCCGCa -3'
miRNA:   3'- ucagCGGCuuCGGCCGCCUa----GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 21947 0.69 0.575754
Target:  5'- -cUCGUCGAAgGCCGuCGGccgcUCCCGCGg -3'
miRNA:   3'- ucAGCGGCUU-CGGCcGCCu---AGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 49841 0.69 0.575754
Target:  5'- gAGgCGCCGccauuccgcGUCGGCGGcgCCCGCc -3'
miRNA:   3'- -UCaGCGGCuu-------CGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 114199 0.69 0.575754
Target:  5'- cGG-CGCCacGGCCGGCGucUCCgGCGg -3'
miRNA:   3'- -UCaGCGGcuUCGGCCGCcuAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 90902 0.69 0.585276
Target:  5'- --aCGCCGAGGCCauCGuGUCCCGCa -3'
miRNA:   3'- ucaGCGGCUUCGGccGCcUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 80446 0.69 0.585276
Target:  5'- cGGcCGCCGGcccGUCGGCGG--CCCGCu -3'
miRNA:   3'- -UCaGCGGCUu--CGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 124407 0.69 0.585276
Target:  5'- cGGUCGUCGGGgcGCCGuccgccGCGGucucucUCCCGCGc -3'
miRNA:   3'- -UCAGCGGCUU--CGGC------CGCCu-----AGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 96742 0.68 0.591959
Target:  5'- --cCGCCGGcgcgucucgcaagcGGCCGGCGGucgagucgCCCGgGg -3'
miRNA:   3'- ucaGCGGCU--------------UCGGCCGCCua------GGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 149652 0.68 0.613998
Target:  5'- cGGuUCGCCGAggaGGCCGaGCGGGggcgCgUCGCGc -3'
miRNA:   3'- -UC-AGCGGCU---UCGGC-CGCCUa---G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 30332 0.68 0.613998
Target:  5'- cGUCGCCGAAGUCGaUGGccaccuUCCCgaGCGa -3'
miRNA:   3'- uCAGCGGCUUCGGCcGCCu-----AGGG--CGC- -5'
10740 3' -61.8 NC_002794.1 + 118200 0.68 0.622643
Target:  5'- cGUCGCCGccGCCGucgccucGCGGAcggCCaCGCa -3'
miRNA:   3'- uCAGCGGCuuCGGC-------CGCCUa--GG-GCGc -5'
10740 3' -61.8 NC_002794.1 + 17130 0.68 0.623604
Target:  5'- ---gGUCGAAGCCGGCGaaacggcgguaGcgCCCGUGa -3'
miRNA:   3'- ucagCGGCUUCGGCCGC-----------CuaGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.