miRNA display CGI


Results 101 - 120 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 17405 0.68 0.623604
Target:  5'- --cCGCCGAAGCCaccGCGGccaucgcgGUCuCCGCGc -3'
miRNA:   3'- ucaGCGGCUUCGGc--CGCC--------UAG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 17130 0.68 0.623604
Target:  5'- ---gGUCGAAGCCGGCGaaacggcgguaGcgCCCGUGa -3'
miRNA:   3'- ucagCGGCUUCGGCCGC-----------CuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 116896 0.68 0.623604
Target:  5'- cGG-CGCCGucuCCGGCGGccgGUCCgGCGu -3'
miRNA:   3'- -UCaGCGGCuucGGCCGCC---UAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 36003 0.68 0.633216
Target:  5'- uGUCGCgGGgcucGGgCGGCGGAaUCCGCc -3'
miRNA:   3'- uCAGCGgCU----UCgGCCGCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 126252 0.68 0.633216
Target:  5'- uGG-CGCgCGAGGUCGGCGGcuggCUgGCGg -3'
miRNA:   3'- -UCaGCG-GCUUCGGCCGCCua--GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 45452 0.68 0.633216
Target:  5'- cGGUCGCgCGucAGCgGGCccaGGGUCCCGa- -3'
miRNA:   3'- -UCAGCG-GCu-UCGgCCG---CCUAGGGCgc -5'
10740 3' -61.8 NC_002794.1 + 65240 0.68 0.633216
Target:  5'- cGGUCGCCGcGG-CGGCG-AUCCgGCc -3'
miRNA:   3'- -UCAGCGGCuUCgGCCGCcUAGGgCGc -5'
10740 3' -61.8 NC_002794.1 + 63014 0.68 0.633216
Target:  5'- cGUgGCUGGAGCUGGUGcucgCCUGCGc -3'
miRNA:   3'- uCAgCGGCUUCGGCCGCcua-GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 189873 0.68 0.633216
Target:  5'- cGUCGCCGccGaCCGGCccgcucGGG-CCCGCc -3'
miRNA:   3'- uCAGCGGCuuC-GGCCG------CCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 149243 0.68 0.641866
Target:  5'- cGUCGCCGggGUC-GCGGcgccaccacccucGUcCCCGCc -3'
miRNA:   3'- uCAGCGGCuuCGGcCGCC-------------UA-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 136981 0.68 0.642827
Target:  5'- cGUCGCgGAAGuaGGCGauguUCuCCGCGg -3'
miRNA:   3'- uCAGCGgCUUCggCCGCcu--AG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 158420 0.68 0.642827
Target:  5'- aGGUgGaggaCGAAcgcacGCCaGGCGGGUUCCGCGc -3'
miRNA:   3'- -UCAgCg---GCUU-----CGG-CCGCCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 116072 0.67 0.652431
Target:  5'- gGGUCGCgGAgcgcucGGCgCGGCGGucGUCgCCGgGg -3'
miRNA:   3'- -UCAGCGgCU------UCG-GCCGCC--UAG-GGCgC- -5'
10740 3' -61.8 NC_002794.1 + 190355 0.67 0.652431
Target:  5'- aGGUCGUCGGccgcgcGGCgCaGCGGGugcUCCCGCu -3'
miRNA:   3'- -UCAGCGGCU------UCG-GcCGCCU---AGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 186261 0.67 0.652431
Target:  5'- cGUCGaCCGGaucaccgccuGGCgCGGCGGca-CCGCGg -3'
miRNA:   3'- uCAGC-GGCU----------UCG-GCCGCCuagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 145812 0.67 0.652431
Target:  5'- --aCGCCGccGCCGGCGGcgagCCgagCGCGu -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCua--GG---GCGC- -5'
10740 3' -61.8 NC_002794.1 + 53510 0.67 0.652431
Target:  5'- gGGUCGCCcaguagauggaGAAGCCgugggcgcGGCGGccgcacagCCCGUGg -3'
miRNA:   3'- -UCAGCGG-----------CUUCGG--------CCGCCua------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 68935 0.67 0.652431
Target:  5'- cGUCGCCcgcGGGCC-GCGGcgCCgGCGc -3'
miRNA:   3'- uCAGCGGc--UUCGGcCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 75373 0.67 0.656268
Target:  5'- --cCGCCGcGGCCGGCGGcggcggccucuccccGUCCCu-- -3'
miRNA:   3'- ucaGCGGCuUCGGCCGCC---------------UAGGGcgc -5'
10740 3' -61.8 NC_002794.1 + 21996 0.67 0.66202
Target:  5'- cGUCGCCGGcaAGCCGGCcaaggCgUGCGa -3'
miRNA:   3'- uCAGCGGCU--UCGGCCGccua-GgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.