Results 121 - 140 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10740 | 3' | -61.8 | NC_002794.1 | + | 58530 | 0.67 | 0.66202 |
Target: 5'- --aCGCCGAGGCCuucgccGCGGcgCgCGCGc -3' miRNA: 3'- ucaGCGGCUUCGGc-----CGCCuaGgGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 184497 | 0.67 | 0.66202 |
Target: 5'- cGGaCGCCcGGGCgGcGCGGGcCCCGCGc -3' miRNA: 3'- -UCaGCGGcUUCGgC-CGCCUaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 15269 | 0.67 | 0.66202 |
Target: 5'- cGUCGgCG-AGCCGcGCGGcUCCCuccGCGc -3' miRNA: 3'- uCAGCgGCuUCGGC-CGCCuAGGG---CGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 136381 | 0.67 | 0.66202 |
Target: 5'- aGGUCGuuGAGcaCCGGCuccGGGUCgCGCGu -3' miRNA: 3'- -UCAGCggCUUc-GGCCG---CCUAGgGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 43627 | 0.67 | 0.66202 |
Target: 5'- uGGcCGCCaGGAGCUGGUGGAacacgcUgCCGCc -3' miRNA: 3'- -UCaGCGG-CUUCGGCCGCCU------AgGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 145473 | 0.67 | 0.66202 |
Target: 5'- cGGUCGCCGAAgGCCGa-GGAUCgCGa- -3' miRNA: 3'- -UCAGCGGCUU-CGGCcgCCUAGgGCgc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 40408 | 0.67 | 0.671588 |
Target: 5'- cGGUCGCgGGgucGGCCGGCGacucugcaGAUCUCGg- -3' miRNA: 3'- -UCAGCGgCU---UCGGCCGC--------CUAGGGCgc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 130051 | 0.67 | 0.671588 |
Target: 5'- cGUCGCCGucaccgGAGCCGGaGGAcUCCUuCGa -3' miRNA: 3'- uCAGCGGC------UUCGGCCgCCU-AGGGcGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 189573 | 0.67 | 0.671588 |
Target: 5'- cGGUCgGCCGGcccgGGCCGGCGccccuuagCCCGUc -3' miRNA: 3'- -UCAG-CGGCU----UCGGCCGCcua-----GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 58009 | 0.67 | 0.679222 |
Target: 5'- cGUCGCCGccggggccgccGCCGGCGaa-CCCGCc -3' miRNA: 3'- uCAGCGGCuu---------CGGCCGCcuaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 77965 | 0.67 | 0.680176 |
Target: 5'- cGUCGCCGAGccgacuccuccGCCucggaacGGCGGGcguuguUCCgGCGg -3' miRNA: 3'- uCAGCGGCUU-----------CGG-------CCGCCU------AGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 34794 | 0.67 | 0.681128 |
Target: 5'- gAGUCgGCCGAA-CCGGCccGGG-CCgCGCGa -3' miRNA: 3'- -UCAG-CGGCUUcGGCCG--CCUaGG-GCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 15182 | 0.67 | 0.681128 |
Target: 5'- -uUCGCCGGAGaCCGG-GuGAacgaccgCCCGCGa -3' miRNA: 3'- ucAGCGGCUUC-GGCCgC-CUa------GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 61825 | 0.67 | 0.681128 |
Target: 5'- cGGcCGCCGGcGGCCGGCGucacUCCGCu -3' miRNA: 3'- -UCaGCGGCU-UCGGCCGCcua-GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 148802 | 0.67 | 0.684934 |
Target: 5'- cGUCGCCG-AGCaC-GCGGAgaucuggagacugcCCCGCGa -3' miRNA: 3'- uCAGCGGCuUCG-GcCGCCUa-------------GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 106342 | 0.67 | 0.689684 |
Target: 5'- cGGuUCGCCGGgucgacGGCgGGCGGGcgccgguUCgCGCGg -3' miRNA: 3'- -UC-AGCGGCU------UCGgCCGCCU-------AGgGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 96904 | 0.67 | 0.690632 |
Target: 5'- cGUCgGgCGGAGgUGGCGGAggcgCCgGCGa -3' miRNA: 3'- uCAG-CgGCUUCgGCCGCCUa---GGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 44268 | 0.67 | 0.690632 |
Target: 5'- cGGcCGCCGggGaCGGaGGAgUCCGCGc -3' miRNA: 3'- -UCaGCGGCuuCgGCCgCCUaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 86905 | 0.67 | 0.694422 |
Target: 5'- gGGcCGCCGAcccggugacgcccguGGCgGGCaggcggggcgGGAUCCgGCGa -3' miRNA: 3'- -UCaGCGGCU---------------UCGgCCG----------CCUAGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 42485 | 0.67 | 0.700094 |
Target: 5'- --gCGCCGggGCCGaGCGGAgagUGUGa -3' miRNA: 3'- ucaGCGGCuuCGGC-CGCCUaggGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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