miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 111634 0.66 0.746493
Target:  5'- ---gGCCGccGCCGGuCGGG-CgCCGCGg -3'
miRNA:   3'- ucagCGGCuuCGGCC-GCCUaG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 117361 0.66 0.746493
Target:  5'- -cUCGuuGGAG-CGGCGGGccgCCUGCa -3'
miRNA:   3'- ucAGCggCUUCgGCCGCCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 38423 0.66 0.745584
Target:  5'- -cUCGCCGAcuccauggcggcgGGCCGGacugaGGAgCCgGCGc -3'
miRNA:   3'- ucAGCGGCU-------------UCGGCCg----CCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 81570 0.66 0.745584
Target:  5'- cGcCGCCGc-GCCGGacgaagaagaagaCGGA-CCCGCGg -3'
miRNA:   3'- uCaGCGGCuuCGGCC-------------GCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 115808 0.66 0.743762
Target:  5'- cGUCGgCaGAAGCucuuccgccuggauCGGCGGggCCCgGCGg -3'
miRNA:   3'- uCAGCgG-CUUCG--------------GCCGCCuaGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 70270 0.66 0.741023
Target:  5'- cGGagGCCGcgaaggccggagagcAGGCCGGgGGggCCCGgGc -3'
miRNA:   3'- -UCagCGGC---------------UUCGGCCgCCuaGGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 44860 0.66 0.741023
Target:  5'- cGUCGUCG-AGCCGcagacgcugcaacucGCGGAcgaCCUGCGu -3'
miRNA:   3'- uCAGCGGCuUCGGC---------------CGCCUa--GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 43982 0.66 0.737359
Target:  5'- uGGUCGuuGGAGCCGGacgugugGGAgcaCgGCGc -3'
miRNA:   3'- -UCAGCggCUUCGGCCg------CCUag-GgCGC- -5'
10740 3' -61.8 NC_002794.1 + 86753 0.66 0.737359
Target:  5'- --aCGagCGAAGCCgGGUGGAUCgCCGgGa -3'
miRNA:   3'- ucaGCg-GCUUCGG-CCGCCUAG-GGCgC- -5'
10740 3' -61.8 NC_002794.1 + 90225 0.66 0.737359
Target:  5'- --gCGCCGGAGCCccgccuGUGGucCCCGCGc -3'
miRNA:   3'- ucaGCGGCUUCGGc-----CGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44347 0.66 0.737359
Target:  5'- cGG-CGCCGGcgagaccgagAGCgCGGCGGGcgcgacgUCCGCGa -3'
miRNA:   3'- -UCaGCGGCU----------UCG-GCCGCCUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44296 0.66 0.736442
Target:  5'- --cCGCCG-GGCCGGCgaggcggGGAgcgaCCGCGa -3'
miRNA:   3'- ucaGCGGCuUCGGCCG-------CCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 186622 0.66 0.736442
Target:  5'- aGGUCuccgccaGCCGAcacAGcCCGcGCGGGUCggCCGCGc -3'
miRNA:   3'- -UCAG-------CGGCU---UC-GGC-CGCCUAG--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 10486 0.66 0.728145
Target:  5'- --aCGCCGAagcgcagucuGGCCGGgGGcUCCgaGCGa -3'
miRNA:   3'- ucaGCGGCU----------UCGGCCgCCuAGGg-CGC- -5'
10740 3' -61.8 NC_002794.1 + 17675 0.66 0.728145
Target:  5'- cGcCGCCGGccCCGGCGGAgaccgagCCGCa -3'
miRNA:   3'- uCaGCGGCUucGGCCGCCUag-----GGCGc -5'
10740 3' -61.8 NC_002794.1 + 49611 0.66 0.728145
Target:  5'- --aCGgCGGGcGCCGGCGGcgCCuCGCc -3'
miRNA:   3'- ucaGCgGCUU-CGGCCGCCuaGG-GCGc -5'
10740 3' -61.8 NC_002794.1 + 101671 0.66 0.728145
Target:  5'- --cCGuCCGAAacGCCGGCGGAgcgcgagCCCGa- -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCCUa------GGGCgc -5'
10740 3' -61.8 NC_002794.1 + 68765 0.66 0.728145
Target:  5'- gGGcCGCCGGGgcGCCGGacgccCGGcUCUCGCGc -3'
miRNA:   3'- -UCaGCGGCUU--CGGCC-----GCCuAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 117542 0.66 0.728145
Target:  5'- aGGUUGCCGugcagcagcucGAGCCGGuCGuGcagCCCGCc -3'
miRNA:   3'- -UCAGCGGC-----------UUCGGCC-GC-Cua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 128259 0.66 0.728145
Target:  5'- uGGUCGCgguCGggGCCGagcGCGGAg-CCGaCGg -3'
miRNA:   3'- -UCAGCG---GCuuCGGC---CGCCUagGGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.