miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 149965 0.66 0.728145
Target:  5'- cGUgGCCGAccuGCC-GCGGA-CCgGCGg -3'
miRNA:   3'- uCAgCGGCUu--CGGcCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 61881 0.66 0.718858
Target:  5'- cGUCGUCGgcGCCGcGCGGcgagCGCGg -3'
miRNA:   3'- uCAGCGGCuuCGGC-CGCCuaggGCGC- -5'
10740 3' -61.8 NC_002794.1 + 71953 0.66 0.718858
Target:  5'- -cUCGCCGAcguaCCGGCGcaucagccGGUCCCgGCGg -3'
miRNA:   3'- ucAGCGGCUuc--GGCCGC--------CUAGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 92868 0.66 0.718858
Target:  5'- --aCGCCGccucGGGCCGGCacGUCCUGCu -3'
miRNA:   3'- ucaGCGGC----UUCGGCCGccUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 129072 0.66 0.718858
Target:  5'- uGUCGCgGcuGgCGGCGGAccgUCCgGUGg -3'
miRNA:   3'- uCAGCGgCuuCgGCCGCCU---AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 142942 0.66 0.718858
Target:  5'- aGGUgGCCGAggggaAGUCGGCGGcGUCgaGCu -3'
miRNA:   3'- -UCAgCGGCU-----UCGGCCGCC-UAGggCGc -5'
10740 3' -61.8 NC_002794.1 + 111608 0.66 0.718858
Target:  5'- -aUCuCCcAGGCCGGCGGGgccgCCGCGg -3'
miRNA:   3'- ucAGcGGcUUCGGCCGCCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 101482 0.66 0.718858
Target:  5'- --cCGcCCGAAacGCCGGCGGccgGUCCgaGCGg -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCC---UAGGg-CGC- -5'
10740 3' -61.8 NC_002794.1 + 60635 0.66 0.718858
Target:  5'- cGGaC-CCGgcGCCGGCGGcgCCgGCc -3'
miRNA:   3'- -UCaGcGGCuuCGGCCGCCuaGGgCGc -5'
10740 3' -61.8 NC_002794.1 + 42647 0.66 0.718858
Target:  5'- gAGUCgcgGCCGAAGCCGaCGGcgccgCCgGCa -3'
miRNA:   3'- -UCAG---CGGCUUCGGCcGCCua---GGgCGc -5'
10740 3' -61.8 NC_002794.1 + 121386 0.66 0.709504
Target:  5'- cGcCGCCGGgaccgcGGCCGGCGccgggaCCGCGa -3'
miRNA:   3'- uCaGCGGCU------UCGGCCGCcuag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 108152 0.66 0.709504
Target:  5'- cGcCGCCGGGagcGCCGGCGcGAagaCgCCGCGa -3'
miRNA:   3'- uCaGCGGCUU---CGGCCGC-CUa--G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 133378 0.66 0.709504
Target:  5'- cGGUCGUCGu--CCGGCGGucaugaucggCCCGgGg -3'
miRNA:   3'- -UCAGCGGCuucGGCCGCCua--------GGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 30083 0.66 0.709504
Target:  5'- cGGUCGaCGAGGCgcgCGGCcGGUCCCGa- -3'
miRNA:   3'- -UCAGCgGCUUCG---GCCGcCUAGGGCgc -5'
10740 3' -61.8 NC_002794.1 + 111768 0.66 0.709504
Target:  5'- cGcCGUCGggGCgGGCucguucgucaGGAgcgCCCGCa -3'
miRNA:   3'- uCaGCGGCuuCGgCCG----------CCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 37245 0.67 0.703865
Target:  5'- aGGUCGUCGAcgcucucgcucuccGUCGGCGGG-CgCGCGg -3'
miRNA:   3'- -UCAGCGGCUu-------------CGGCCGCCUaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 50904 0.67 0.700094
Target:  5'- --cCGCCGAcuccagcuGCCGGagcuCGGAcucgCCCGCGg -3'
miRNA:   3'- ucaGCGGCUu-------CGGCC----GCCUa---GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42485 0.67 0.700094
Target:  5'- --gCGCCGggGCCGaGCGGAgagUGUGa -3'
miRNA:   3'- ucaGCGGCuuCGGC-CGCCUaggGCGC- -5'
10740 3' -61.8 NC_002794.1 + 86905 0.67 0.694422
Target:  5'- gGGcCGCCGAcccggugacgcccguGGCgGGCaggcggggcgGGAUCCgGCGa -3'
miRNA:   3'- -UCaGCGGCU---------------UCGgCCG----------CCUAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 96904 0.67 0.690632
Target:  5'- cGUCgGgCGGAGgUGGCGGAggcgCCgGCGa -3'
miRNA:   3'- uCAG-CgGCUUCgGCCGCCUa---GGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.