Results 81 - 100 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 3' | -61.8 | NC_002794.1 | + | 116072 | 0.67 | 0.652431 |
Target: 5'- gGGUCGCgGAgcgcucGGCgCGGCGGucGUCgCCGgGg -3' miRNA: 3'- -UCAGCGgCU------UCG-GCCGCC--UAG-GGCgC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 68935 | 0.67 | 0.652431 |
Target: 5'- cGUCGCCcgcGGGCC-GCGGcgCCgGCGc -3' miRNA: 3'- uCAGCGGc--UUCGGcCGCCuaGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 186261 | 0.67 | 0.652431 |
Target: 5'- cGUCGaCCGGaucaccgccuGGCgCGGCGGca-CCGCGg -3' miRNA: 3'- uCAGC-GGCU----------UCG-GCCGCCuagGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 145812 | 0.67 | 0.652431 |
Target: 5'- --aCGCCGccGCCGGCGGcgagCCgagCGCGu -3' miRNA: 3'- ucaGCGGCuuCGGCCGCCua--GG---GCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 190355 | 0.67 | 0.652431 |
Target: 5'- aGGUCGUCGGccgcgcGGCgCaGCGGGugcUCCCGCu -3' miRNA: 3'- -UCAGCGGCU------UCG-GcCGCCU---AGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 158420 | 0.68 | 0.642827 |
Target: 5'- aGGUgGaggaCGAAcgcacGCCaGGCGGGUUCCGCGc -3' miRNA: 3'- -UCAgCg---GCUU-----CGG-CCGCCUAGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 136981 | 0.68 | 0.642827 |
Target: 5'- cGUCGCgGAAGuaGGCGauguUCuCCGCGg -3' miRNA: 3'- uCAGCGgCUUCggCCGCcu--AG-GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 149243 | 0.68 | 0.641866 |
Target: 5'- cGUCGCCGggGUC-GCGGcgccaccacccucGUcCCCGCc -3' miRNA: 3'- uCAGCGGCuuCGGcCGCC-------------UA-GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 63014 | 0.68 | 0.633216 |
Target: 5'- cGUgGCUGGAGCUGGUGcucgCCUGCGc -3' miRNA: 3'- uCAgCGGCUUCGGCCGCcua-GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 36003 | 0.68 | 0.633216 |
Target: 5'- uGUCGCgGGgcucGGgCGGCGGAaUCCGCc -3' miRNA: 3'- uCAGCGgCU----UCgGCCGCCUaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 126252 | 0.68 | 0.633216 |
Target: 5'- uGG-CGCgCGAGGUCGGCGGcuggCUgGCGg -3' miRNA: 3'- -UCaGCG-GCUUCGGCCGCCua--GGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 189873 | 0.68 | 0.633216 |
Target: 5'- cGUCGCCGccGaCCGGCccgcucGGG-CCCGCc -3' miRNA: 3'- uCAGCGGCuuC-GGCCG------CCUaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 65240 | 0.68 | 0.633216 |
Target: 5'- cGGUCGCCGcGG-CGGCG-AUCCgGCc -3' miRNA: 3'- -UCAGCGGCuUCgGCCGCcUAGGgCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 45452 | 0.68 | 0.633216 |
Target: 5'- cGGUCGCgCGucAGCgGGCccaGGGUCCCGa- -3' miRNA: 3'- -UCAGCG-GCu-UCGgCCG---CCUAGGGCgc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 17130 | 0.68 | 0.623604 |
Target: 5'- ---gGUCGAAGCCGGCGaaacggcgguaGcgCCCGUGa -3' miRNA: 3'- ucagCGGCUUCGGCCGC-----------CuaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 90953 | 0.68 | 0.623604 |
Target: 5'- uGUgCGCCGAGGCC--CGGG-CCCGCu -3' miRNA: 3'- uCA-GCGGCUUCGGccGCCUaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 17405 | 0.68 | 0.623604 |
Target: 5'- --cCGCCGAAGCCaccGCGGccaucgcgGUCuCCGCGc -3' miRNA: 3'- ucaGCGGCUUCGGc--CGCC--------UAG-GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 116896 | 0.68 | 0.623604 |
Target: 5'- cGG-CGCCGucuCCGGCGGccgGUCCgGCGu -3' miRNA: 3'- -UCaGCGGCuucGGCCGCC---UAGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 118200 | 0.68 | 0.622643 |
Target: 5'- cGUCGCCGccGCCGucgccucGCGGAcggCCaCGCa -3' miRNA: 3'- uCAGCGGCuuCGGC-------CGCCUa--GG-GCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 149652 | 0.68 | 0.613998 |
Target: 5'- cGGuUCGCCGAggaGGCCGaGCGGGggcgCgUCGCGc -3' miRNA: 3'- -UC-AGCGGCU---UCGGC-CGCCUa---G-GGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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