Results 101 - 120 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10740 | 3' | -61.8 | NC_002794.1 | + | 149652 | 0.68 | 0.613998 |
Target: 5'- cGGuUCGCCGAggaGGCCGaGCGGGggcgCgUCGCGc -3' miRNA: 3'- -UC-AGCGGCU---UCGGC-CGCCUa---G-GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 96742 | 0.68 | 0.591959 |
Target: 5'- --cCGCCGGcgcgucucgcaagcGGCCGGCGGucgagucgCCCGgGg -3' miRNA: 3'- ucaGCGGCU--------------UCGGCCGCCua------GGGCgC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 124407 | 0.69 | 0.585276 |
Target: 5'- cGGUCGUCGGGgcGCCGuccgccGCGGucucucUCCCGCGc -3' miRNA: 3'- -UCAGCGGCUU--CGGC------CGCCu-----AGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 80446 | 0.69 | 0.585276 |
Target: 5'- cGGcCGCCGGcccGUCGGCGG--CCCGCu -3' miRNA: 3'- -UCaGCGGCUu--CGGCCGCCuaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 90902 | 0.69 | 0.585276 |
Target: 5'- --aCGCCGAGGCCauCGuGUCCCGCa -3' miRNA: 3'- ucaGCGGCUUCGGccGCcUAGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 114199 | 0.69 | 0.575754 |
Target: 5'- cGG-CGCCacGGCCGGCGucUCCgGCGg -3' miRNA: 3'- -UCaGCGGcuUCGGCCGCcuAGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 49841 | 0.69 | 0.575754 |
Target: 5'- gAGgCGCCGccauuccgcGUCGGCGGcgCCCGCc -3' miRNA: 3'- -UCaGCGGCuu-------CGGCCGCCuaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 21947 | 0.69 | 0.575754 |
Target: 5'- -cUCGUCGAAgGCCGuCGGccgcUCCCGCGg -3' miRNA: 3'- ucAGCGGCUU-CGGCcGCCu---AGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 137577 | 0.69 | 0.566267 |
Target: 5'- cGcCGCCGggGCCGGagugcgGGGagCCGCc -3' miRNA: 3'- uCaGCGGCuuCGGCCg-----CCUagGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 183609 | 0.69 | 0.566267 |
Target: 5'- gGGcCGCgCGcGGCCGGCGcc-CCCGCGc -3' miRNA: 3'- -UCaGCG-GCuUCGGCCGCcuaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 100233 | 0.69 | 0.566267 |
Target: 5'- aGGUCuUCGAGGUCGGCGucagCCCGCu -3' miRNA: 3'- -UCAGcGGCUUCGGCCGCcua-GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 104003 | 0.69 | 0.566267 |
Target: 5'- ---aGCCGccGCCGGCGGAacgccUCCGCa -3' miRNA: 3'- ucagCGGCuuCGGCCGCCUa----GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 58864 | 0.69 | 0.565321 |
Target: 5'- cGUCGCCGAccggcAGCCGuGCGcgccgcgcagcucGAggCCCGCa -3' miRNA: 3'- uCAGCGGCU-----UCGGC-CGC-------------CUa-GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 48623 | 0.69 | 0.556822 |
Target: 5'- cAGaCGCgGAgcGGCCGuCGGggCCCGCGa -3' miRNA: 3'- -UCaGCGgCU--UCGGCcGCCuaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 105901 | 0.69 | 0.556822 |
Target: 5'- gAGUCGCCGcGG-CGGCGGcgCuaCCGCc -3' miRNA: 3'- -UCAGCGGCuUCgGCCGCCuaG--GGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 119506 | 0.69 | 0.556822 |
Target: 5'- gGGUCGUCGGcggcgcggAGCCGGCcgcGGAccccucgUCCGCGg -3' miRNA: 3'- -UCAGCGGCU--------UCGGCCG---CCUa------GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 111085 | 0.69 | 0.556822 |
Target: 5'- cGUCGgCaGGGUCGGCGGG-CCCgGCGg -3' miRNA: 3'- uCAGCgGcUUCGGCCGCCUaGGG-CGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 187050 | 0.69 | 0.547421 |
Target: 5'- cAGUC-CCGGAGCCcGCGG--CCCGCc -3' miRNA: 3'- -UCAGcGGCUUCGGcCGCCuaGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 180921 | 0.69 | 0.547421 |
Target: 5'- -cUCGCCGgcGCCGuCGGAggucggUCUCGCGu -3' miRNA: 3'- ucAGCGGCuuCGGCcGCCU------AGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 61515 | 0.69 | 0.547421 |
Target: 5'- --cCGCCGGAcggcggccGCCGGCGGccgCCGCGa -3' miRNA: 3'- ucaGCGGCUU--------CGGCCGCCuagGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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