miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 35779 0.7 0.528779
Target:  5'- cGUCGCCGgcGucgucuCCGGCGuGAcCCUGCGc -3'
miRNA:   3'- uCAGCGGCuuC------GGCCGC-CUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 36003 0.68 0.633216
Target:  5'- uGUCGCgGGgcucGGgCGGCGGAaUCCGCc -3'
miRNA:   3'- uCAGCGgCU----UCgGCCGCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 36910 0.66 0.746493
Target:  5'- aGGUCG-CGgcGCCGGC----CCCGCGa -3'
miRNA:   3'- -UCAGCgGCuuCGGCCGccuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 37245 0.67 0.703865
Target:  5'- aGGUCGUCGAcgcucucgcucuccGUCGGCGGG-CgCGCGg -3'
miRNA:   3'- -UCAGCGGCUu-------------CGGCCGCCUaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 37742 0.72 0.39857
Target:  5'- cGcCGCCGGcggcGGCgCGGCGGcgCCgGCGg -3'
miRNA:   3'- uCaGCGGCU----UCG-GCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 38423 0.66 0.745584
Target:  5'- -cUCGCCGAcuccauggcggcgGGCCGGacugaGGAgCCgGCGc -3'
miRNA:   3'- ucAGCGGCU-------------UCGGCCg----CCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 40408 0.67 0.671588
Target:  5'- cGGUCGCgGGgucGGCCGGCGacucugcaGAUCUCGg- -3'
miRNA:   3'- -UCAGCGgCU---UCGGCCGC--------CUAGGGCgc -5'
10740 3' -61.8 NC_002794.1 + 40608 0.71 0.43977
Target:  5'- cGUCGCCGgcGuCCGacuccGCGGAgUCCGCGa -3'
miRNA:   3'- uCAGCGGCuuC-GGC-----CGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 41248 0.74 0.297192
Target:  5'- cGGcCGCCGAcGCCGGCGG--CCCGUc -3'
miRNA:   3'- -UCaGCGGCUuCGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 42205 0.7 0.492244
Target:  5'- -cUCGCCGccGCCGGUcugccgcuGGAUCagCCGCGa -3'
miRNA:   3'- ucAGCGGCuuCGGCCG--------CCUAG--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42485 0.67 0.700094
Target:  5'- --gCGCCGggGCCGaGCGGAgagUGUGa -3'
miRNA:   3'- ucaGCGGCuuCGGC-CGCCUaggGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42647 0.66 0.718858
Target:  5'- gAGUCgcgGCCGAAGCCGaCGGcgccgCCgGCa -3'
miRNA:   3'- -UCAG---CGGCUUCGGCcGCCua---GGgCGc -5'
10740 3' -61.8 NC_002794.1 + 42682 0.71 0.465623
Target:  5'- gGGUaCGCCGAGaCCGGCGag-CCCGCc -3'
miRNA:   3'- -UCA-GCGGCUUcGGCCGCcuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 43627 0.67 0.66202
Target:  5'- uGGcCGCCaGGAGCUGGUGGAacacgcUgCCGCc -3'
miRNA:   3'- -UCaGCGG-CUUCGGCCGCCU------AgGGCGc -5'
10740 3' -61.8 NC_002794.1 + 43982 0.66 0.737359
Target:  5'- uGGUCGuuGGAGCCGGacgugugGGAgcaCgGCGc -3'
miRNA:   3'- -UCAGCggCUUCGGCCg------CCUag-GgCGC- -5'
10740 3' -61.8 NC_002794.1 + 44268 0.67 0.690632
Target:  5'- cGGcCGCCGggGaCGGaGGAgUCCGCGc -3'
miRNA:   3'- -UCaGCGGCuuCgGCCgCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44296 0.66 0.736442
Target:  5'- --cCGCCG-GGCCGGCgaggcggGGAgcgaCCGCGa -3'
miRNA:   3'- ucaGCGGCuUCGGCCG-------CCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44347 0.66 0.737359
Target:  5'- cGG-CGCCGGcgagaccgagAGCgCGGCGGGcgcgacgUCCGCGa -3'
miRNA:   3'- -UCaGCGGCU----------UCG-GCCGCCUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44544 0.76 0.248847
Target:  5'- cGUCGUCGucGCCGGCGGcggcgCCCGUu -3'
miRNA:   3'- uCAGCGGCuuCGGCCGCCua---GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 44860 0.66 0.741023
Target:  5'- cGUCGUCG-AGCCGcagacgcugcaacucGCGGAcgaCCUGCGu -3'
miRNA:   3'- uCAGCGGCuUCGGC---------------CGCCUa--GGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.